View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11701_low_3 (Length: 704)

Name: NF11701_low_3
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11701_low_3
NF11701_low_3
[»] chr4 (23 HSPs)
chr4 (24-312)||(26084935-26085223)
chr4 (383-554)||(26085294-26085465)
chr4 (24-312)||(26065210-26065519)
chr4 (517-694)||(26056474-26056653)
chr4 (21-152)||(26097207-26097338)
chr4 (24-152)||(26120497-26120625)
chr4 (588-694)||(26085711-26085817)
chr4 (191-312)||(26097383-26097504)
chr4 (24-163)||(26036562-26036701)
chr4 (24-152)||(26127154-26127282)
chr4 (468-560)||(26111716-26111808)
chr4 (560-671)||(26112067-26112178)
chr4 (468-560)||(26056142-26056234)
chr4 (468-560)||(26067804-26067896)
chr4 (468-554)||(26121243-26121329)
chr4 (195-312)||(26036754-26036868)
chr4 (468-560)||(26128670-26128762)
chr4 (400-452)||(26048361-26048413)
chr4 (400-452)||(26053542-26053594)
chr4 (400-452)||(26098702-26098754)
chr4 (191-251)||(26120685-26120745)
chr4 (468-560)||(26038237-26038329)
chr4 (556-593)||(26086292-26086329)
[»] chr1 (1 HSPs)
chr1 (57-139)||(6773916-6773998)


Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 24 - 312
Target Start/End: Original strand, 26084935 - 26085223
Alignment:
Q  24 atctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacag 123  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||| |||||||||||    
T  26084935 atctctcgtttaactgcgattttctctaataaatttgccaatctcgggttcaagaattcatcaggagcaacagtaggattggttcttaatgccttgacag 26085034  T
Q  124 taccaaaaggtccagctttttcctgtttactcaatgcaagcaacnnnnnnncagcctggtcttttccttccgtcaactccctcacctgctttttcagctc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26085035 taccaaaaggtccagctttttcctgtttactcaatgcaagcaactttttttcagcctggtcttttccttccgtcaactccctcacctgttttttcagctc 26085134  T
Q  224 tgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattcagattcagctgaattttcctgcc 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26085135 tgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattcagattcagctgaattttcctgcc 26085223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 383 - 554
Target Start/End: Original strand, 26085294 - 26085465
Alignment:
Q  383 atgcatcctataagatgctcacataatcttgataatgatgaagaaaggtattataaaattacaaattgaagttagagaacttcaatgatgaaaatgaaac 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26085294 atgcatcctataagatgctcacataatcttgataatgatgaagaaaggtattataaaattactaattgaagttagagaacttcaatgatgaaaatgaaac 26085393  T
Q  483 ctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaagaagtcattagg 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26085394 ctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaagaagtcattagg 26085465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 24 - 312
Target Start/End: Original strand, 26065210 - 26065519
Alignment:
Q  24 atctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacag 123  Q
    |||||| |||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26065210 atctcttgtttaactgcgattttatctaatatatttgccaatctcgggttcacggattcatcaggagcaacattaggattggttcttaatgccttgacag 26065309  T
Q  124 taccaaaaggtccagctttttcctgtttactcaatgcaagcaacnnnnnnncagcctggtcttttcc---------------------ttccgtcaactc 202  Q
    ||||||||||||||||||||||||||||||  ||||||||||||       | ||||||||||||||                     ||||||||||||    
T  26065310 taccaaaaggtccagctttttcctgtttacctaatgcaagcaacattttttctgcctggtcttttccttgctctgcaagctgaagcctttccgtcaactc 26065409  T
Q  203 cctcacctgctttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattcagattcagctgaa 302  Q
     ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  26065410 actcacttgttttttcagctctgcatttttatctgataagagcgccacaaattctgattttaacatgttaactttatctgatgattcagattctgctgaa 26065509  T
Q  303 ttttcctgcc 312  Q
     |||||||||    
T  26065510 ctttcctgcc 26065519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 517 - 694
Target Start/End: Complemental strand, 26056653 - 26056474
Alignment:
Q  517 attgaggtaatagattgagaaacaaagaagtcattaggtaaaaatcactccaaaatcacacattcctttttctatatataggtatagatgaattctcata 616  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26056653 attgaggtaatagattgagaaacaaagatgtcattaggaaaaaatcactccaaaatcacacattcctttttctatatataggtatagatgaattctcata 26056554  T
Q  617 ttcccatcaaga--atgtttgagaggctagtagttcaatcaaattcagtatcaaagtcgaagtactgaatatctgtgctc 694  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26056553 ttcccatcaagaatatgtttgagaggctagtagttcaatcaaattcagtttcaaagtcgaagtactgaatatctgtgctc 26056474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 26097207 - 26097338
Alignment:
Q  21 ataatctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttga 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26097207 ataatctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggactggttcttattgccttga 26097306  T
Q  121 cagtaccaaaaggtccagctttttcctgttta 152  Q
    ||||||||||||||||||||||||||| ||||    
T  26097307 cagtaccaaaaggtccagctttttcctcttta 26097338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 26120497 - 26120625
Alignment:
Q  24 atctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacag 123  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  26120497 atctctcgtttaactgcgattttctctaataaatttgccaatctcgggttcacggattcatcaggagcaacaataggattggttcttaatgccttgacag 26120596  T
Q  124 taccaaaaggtccagctttttcctgttta 152  Q
    |||||||||||||||||||||||||||||    
T  26120597 taccaaaaggtccagctttttcctgttta 26120625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 588 - 694
Target Start/End: Complemental strand, 26085817 - 26085711
Alignment:
Q  588 ctatatataggtatagatgaattctcatattcccatcaagaatgtttgagaggctagtagttcaatcaaattcagtatcaaagtcgaagtactgaatatc 687  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26085817 ctatatataggtatagatgaattctcatattcccatcaagaatgtttgagaggctagtagttcaatcaaattcagtatcaaagtcgaagtactgaatatc 26085718  T
Q  688 tgtgctc 694  Q
    || ||||    
T  26085717 tgcgctc 26085711  T

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Target: chr4; HSP #8
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 191 - 312
Target Start/End: Original strand, 26097383 - 26097504
Alignment:
Q  191 ttccgtcaactccctcacctgctttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattca 290  Q
    |||||||| |||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26097383 ttccgtcatctccctcaactgttttttcagctctgcatttttatctgataacagtgccacaaattctgattttaacatgttaactctatctgatgattca 26097482  T
Q  291 gattcagctgaattttcctgcc 312  Q
     |||||||||||||||||||||    
T  26097483 cattcagctgaattttcctgcc 26097504  T

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Target: chr4; HSP #9
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 26036562 - 26036701
Alignment:
Q  24 atctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacag 123  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| | |||||||||    
T  26036562 atctctcgtttaactgagattttctccaatatctttgccaatcttggattcacggattcatcaggaacaacagtaggattggttcttaatcccttgacag 26036661  T
Q  124 taccaaaaggtccagctttttcctgtttactcaatgcaag 163  Q
    |||||||||||||||||||||| |||||||  ||||||||    
T  26036662 taccaaaaggtccagctttttcttgtttacctaatgcaag 26036701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 26127154 - 26127282
Alignment:
Q  24 atctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacag 123  Q
    |||||||| || ||||| |||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26127154 atctctcggtttactgcaattttctctaataaatttgccaatctcgggttcacggattcatcaggagcaacattaggattggttcttaatgccttgacag 26127253  T
Q  124 taccaaaaggtccagctttttcctgttta 152  Q
    |||||||||||||||||||||||| ||||    
T  26127254 taccaaaaggtccagctttttcctcttta 26127282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 468 - 560
Target Start/End: Original strand, 26111716 - 26111808
Alignment:
Q  468 tgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaagaagtcattaggtaaaaa 560  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26111716 tgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaagaagtcattaggaaaaaa 26111808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 560 - 671
Target Start/End: Complemental strand, 26112178 - 26112067
Alignment:
Q  560 atcactccaaaatcacacattcctttttctatatataggtatagatgaattctcatattcccatcaagaatgtttgagaggctagtagttcaatcaaatt 659  Q
    |||| |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26112178 atcaatccaaaatcacatattcctttatctatatataggtatagatgtattctcatattcccatcaagaatatttgagaggctagtagttcaatcaaatt 26112079  T
Q  660 cagtatcaaagt 671  Q
    |||| |||||||    
T  26112078 cagtttcaaagt 26112067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 468 - 560
Target Start/End: Original strand, 26056142 - 26056234
Alignment:
Q  468 tgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaagaagtcattaggtaaaaa 560  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |||||    
T  26056142 tgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgatttgaggtaatagactgagaaacaaagaagtctttaggaaaaaa 26056234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 468 - 560
Target Start/End: Original strand, 26067804 - 26067896
Alignment:
Q  468 tgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaagaagtcattaggtaaaaa 560  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |||||    
T  26067804 tgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgatttgaggtaatagactgagaaacaaagaagtctttaggaaaaaa 26067896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 468 - 554
Target Start/End: Original strand, 26121243 - 26121329
Alignment:
Q  468 tgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaagaagtcattagg 554  Q
    |||||||||||||||||| ||||||||| |||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  26121243 tgatgaaaatgaaacctgagtcttgggtccagcaaaagggaggagacgaattgaggtaatagattgagaaacaaagaagtcattagg 26121329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 195 - 312
Target Start/End: Original strand, 26036754 - 26036868
Alignment:
Q  195 gtcaactccctcacctgctttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattcagatt 294  Q
    ||||||||||||||||| ||||||||||| || ||||| |||||||    ||||||||| |||||||| |||||||| |||||||||||||||||| |||    
T  26036754 gtcaactccctcacctgttttttcagctcagcgtttttgtctgatac---tgccacaaactctgatttcaacatgttgactctatctgatgattcacatt 26036850  T
Q  295 cagctgaattttcctgcc 312  Q
    ||||||| ||||||||||    
T  26036851 cagctgagttttcctgcc 26036868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 468 - 560
Target Start/End: Original strand, 26128670 - 26128762
Alignment:
Q  468 tgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaagaagtcattaggtaaaaa 560  Q
    ||||||||| |||||||||||||||||| |||||| ||| | | |||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  26128670 tgatgaaaaagaaacctgggtcttgggtccagcaaaagggaagagacgaattgaggtaatggattgagaagcaaagaagtcattaggaaaaaa 26128762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 400 - 452
Target Start/End: Original strand, 26048361 - 26048413
Alignment:
Q  400 ctcacataatcttgataatgatgaagaaaggtattataaaattacaaattgaa 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26048361 ctcacataatcttgataatgatgaagaaaggtattataaaattacaagttgaa 26048413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 400 - 452
Target Start/End: Original strand, 26053542 - 26053594
Alignment:
Q  400 ctcacataatcttgataatgatgaagaaaggtattataaaattacaaattgaa 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26053542 ctcacataatcttgataatgatgaagaaaggtattataaaattacaagttgaa 26053594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 400 - 452
Target Start/End: Original strand, 26098702 - 26098754
Alignment:
Q  400 ctcacataatcttgataatgatgaagaaaggtattataaaattacaaattgaa 452  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  26098702 ctcacataatattgataatgatgaagaaaggtattataaaattacaagttgaa 26098754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 26120685 - 26120745
Alignment:
Q  191 ttccgtcaactccctcacctgctttttcagctctgcatttttatctgataagagtgccaca 251  Q
    ||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |||||||||    
T  26120685 ttccgtcaactccctcaactgtttttttagctctgcatttttatctgataaaagtgccaca 26120745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 468 - 560
Target Start/End: Original strand, 26038237 - 26038329
Alignment:
Q  468 tgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaagaagtcattaggtaaaaa 560  Q
    |||||||||| |||||||||| |||| | || ||||||  | | ||||| |||| |||||||||||||||||||||||| ||||||| |||||    
T  26038237 tgatgaaaataaaacctgggttttggatccaacaacagcgatgcgacgatttgatgtaatagattgagaaacaaagaagccattaggaaaaaa 26038329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 593
Target Start/End: Complemental strand, 26086329 - 26086292
Alignment:
Q  556 aaaaatcactccaaaatcacacattcctttttctatat 593  Q
    |||||||||||||||||| |||||||||||||||||||    
T  26086329 aaaaatcactccaaaatcgcacattcctttttctatat 26086292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 6773916 - 6773998
Alignment:
Q  57 tttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacagtaccaaaaggtccagc 139  Q
    ||||||||||| |||||||| || ||||| |||  ||||  |||||| ||||| |  |||||||||||||||||||| |||||    
T  6773916 tttgccaatctagggttcactgactcatcgggaataacagaaggatttgttctgagagccttgacagtaccaaaaggaccagc 6773998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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