View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11701_low_30 (Length: 255)
Name: NF11701_low_30
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 20 - 245
Target Start/End: Complemental strand, 26056701 - 26056474
Alignment:
| Q |
20 |
tatgcacatgttcaattatcgtataatggactcaagtnnnnnnntttcattgaggtaatagattgagaaacaaagaagtcattaggtaaaaatcactcca |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
26056701 |
tatgcacatgttcctttatcgtataatggactcaagtgaaattttttcattgaggtaatagattgagaaacaaagatgtcattaggaaaaaatcactcca |
26056602 |
T |
|
| Q |
120 |
aaatcacacattcctttttctatatataggtatagatgaattctcatattcccatcaaga--atgtttgagaggctagtagttcaatcaaattcagtatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26056601 |
aaatcacacattcctttttctatatataggtatagatgaattctcatattcccatcaagaatatgtttgagaggctagtagttcaatcaaattcagtttc |
26056502 |
T |
|
| Q |
218 |
aaagtcgaagtactgaatatctgtgctc |
245 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
26056501 |
aaagtcgaagtactgaatatctgtgctc |
26056474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 139 - 245
Target Start/End: Complemental strand, 26085817 - 26085711
Alignment:
| Q |
139 |
ctatatataggtatagatgaattctcatattcccatcaagaatgtttgagaggctagtagttcaatcaaattcagtatcaaagtcgaagtactgaatatc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26085817 |
ctatatataggtatagatgaattctcatattcccatcaagaatgtttgagaggctagtagttcaatcaaattcagtatcaaagtcgaagtactgaatatc |
26085718 |
T |
|
| Q |
239 |
tgtgctc |
245 |
Q |
| |
|
|| |||| |
|
|
| T |
26085717 |
tgcgctc |
26085711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 26112178 - 26112067
Alignment:
| Q |
111 |
atcactccaaaatcacacattcctttttctatatataggtatagatgaattctcatattcccatcaagaatgtttgagaggctagtagttcaatcaaatt |
210 |
Q |
| |
|
|||| |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26112178 |
atcaatccaaaatcacatattcctttatctatatataggtatagatgtattctcatattcccatcaagaatatttgagaggctagtagttcaatcaaatt |
26112079 |
T |
|
| Q |
211 |
cagtatcaaagt |
222 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
26112078 |
cagtttcaaagt |
26112067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26113380 - 26113325
Alignment:
| Q |
1 |
taatggtgtcacgttgagatatgcacatgttcaattatcgtataatggactcaagt |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26113380 |
taatggtgtcacgttgagatatgcacatgttcaattatcgtataatggactcaagt |
26113325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 26111765 - 26111808
Alignment:
| Q |
68 |
attgaggtaatagattgagaaacaaagaagtcattaggtaaaaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26111765 |
attgaggtaatagattgagaaacaaagaagtcattaggaaaaaa |
26111808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 26085428 - 26085465
Alignment:
| Q |
68 |
attgaggtaatagattgagaaacaaagaagtcattagg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26085428 |
attgaggtaatagattgagaaacaaagaagtcattagg |
26085465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 26121292 - 26121329
Alignment:
| Q |
68 |
attgaggtaatagattgagaaacaaagaagtcattagg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26121292 |
attgaggtaatagattgagaaacaaagaagtcattagg |
26121329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 26086329 - 26086292
Alignment:
| Q |
107 |
aaaaatcactccaaaatcacacattcctttttctatat |
144 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26086329 |
aaaaatcactccaaaatcgcacattcctttttctatat |
26086292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 26128719 - 26128762
Alignment:
| Q |
68 |
attgaggtaatagattgagaaacaaagaagtcattaggtaaaaa |
111 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||| ||||| |
|
|
| T |
26128719 |
attgaggtaatggattgagaagcaaagaagtcattaggaaaaaa |
26128762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 26038287 - 26038329
Alignment:
| Q |
69 |
ttgaggtaatagattgagaaacaaagaagtcattaggtaaaaa |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
26038287 |
ttgatgtaatagattgagaaacaaagaagccattaggaaaaaa |
26038329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 26056192 - 26056234
Alignment:
| Q |
69 |
ttgaggtaatagattgagaaacaaagaagtcattaggtaaaaa |
111 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
26056192 |
ttgaggtaatagactgagaaacaaagaagtctttaggaaaaaa |
26056234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 26067854 - 26067896
Alignment:
| Q |
69 |
ttgaggtaatagattgagaaacaaagaagtcattaggtaaaaa |
111 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
26067854 |
ttgaggtaatagactgagaaacaaagaagtctttaggaaaaaa |
26067896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University