View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11701_low_31 (Length: 251)
Name: NF11701_low_31
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_low_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 46770515 - 46770275
Alignment:
| Q |
1 |
aagggtgtcttctagcaaaactcacatatatataaaataaatatgaaaacaaattactaattttatggtacattgttgatattgaaaacaaattactaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46770515 |
aagggtgtcttctagcaaaactcacatatatataaaataaatatgaaaacaaattactaattttatggtacattgttgatattgaaaacaaattactaat |
46770416 |
T |
|
| Q |
101 |
tttatagatcacctttttaagattaagtaggaatcgtcgtgtaagataagcctaagaaattgaacgagcactgacatttagctagtcatattgaagccgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
46770415 |
tttatagatcacctttttaagattaagtaggaatcgtcgtgtaagataagcctaagaaattgaacgagcactgacatttagctagtcatattgaagctac |
46770316 |
T |
|
| Q |
201 |
gtgctgtggctactcctagtgataaatggactaatcctatg |
241 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46770315 |
gtgttgtggctactcctagtgataagtggactaatcctatg |
46770275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 174
Target Start/End: Complemental strand, 46762582 - 46762478
Alignment:
| Q |
70 |
acattgttgatattgaaaacaaattactaattttatagatcacctttttaagattaagtaggaatcgtcgtgtaagataagcctaagaaattgaacgagc |
169 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||||| ||||||| ||||||||| ||||||||| ||||||||| ||| || | ||||||||||||||| |
|
|
| T |
46762582 |
acattgttgatattgaaaacagattgcgcattttatgcatcacctgtttaagattcagtaggaattgtcgtgtaatataggcttgagaaattgaacgagc |
46762483 |
T |
|
| Q |
170 |
actga |
174 |
Q |
| |
|
||||| |
|
|
| T |
46762482 |
actga |
46762478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1271162 - 1271195
Alignment:
| Q |
1 |
aagggtgtcttctagcaaaactcacatatatata |
34 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
1271162 |
aagggtgtcttctagcaaaactcatatatatata |
1271195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 4206446 - 4206413
Alignment:
| Q |
5 |
gtgtcttctagcaaaactcacatatatataaaat |
38 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
4206446 |
gtgtcttctagcaaaactcatatatatataaaat |
4206413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University