View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11701_low_33 (Length: 242)
Name: NF11701_low_33
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 34502134 - 34502351
Alignment:
| Q |
1 |
ttctcatttgcagccatatagagaacataggcttctttaatcatannnnnnngagaaaacaaacttaacaagtggccaattatgtcaccgttatcaggaa |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34502134 |
ttctcatttgcagccatatagagagcataggcttctttaatcatatttttttgagaaa-----cttaacaagtggccaattatgtcaccgttatcaggaa |
34502228 |
T |
|
| Q |
101 |
ggacggtttctggatgaagcagcatcttttgacagatagaagcggcttggtgggtcatatcagtgatacatcttgtgatcaaaagagctttcagtgtaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34502229 |
ggacggtttctggatgaagcagcatcttttgacagatagaagcggcttggtgggtcatatcagtgatacatcttgtgatcaaaagagctttcagtgtaaa |
34502328 |
T |
|
| Q |
201 |
gctgtatgtatcccgattcggca |
223 |
Q |
| |
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| |||||||||| |||||||||| |
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| T |
34502329 |
ggtgtatgtatctcgattcggca |
34502351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 44460546 - 44460325
Alignment:
| Q |
2 |
tctcatttgcagccatatagagaacataggcttctttaatcatannnnnnngagaaaacaaacttaacaagtggccaattatgtcaccgttatcaggaag |
101 |
Q |
| |
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||||||||||||||| | ||||| |||||||||||||||||||| | |||| || |||| || |||| ||| || |||| ||||||||| |
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| T |
44460546 |
tctcatttgcagccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatacaacacgtccccaagtatctcgccgtcatcaggaag |
44460447 |
T |
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| Q |
102 |
gacggtttctggatgaagcagcatcttttgacagatagaagcggcttggtgggtcatatcagtgatacatcttgtgatcaaaagagctttcagtgtaaag |
201 |
Q |
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|| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||| ||||| |||||| ||||| ||| ||| | |
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| T |
44460446 |
gatggtttctggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtcaaaaaagcttgcagcgtatgg |
44460347 |
T |
|
| Q |
202 |
ctgtatgtatcccgattcggca |
223 |
Q |
| |
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| |||||||| ||||||||| |
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| T |
44460346 |
atatatgtatcttgattcggca |
44460325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 44468079 - 44467858
Alignment:
| Q |
2 |
tctcatttgcagccatatagagaacataggcttctttaatcatannnnnnngagaaaacaaacttaacaagtggccaattatgtcaccgttatcaggaag |
101 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||||||||||| | |||| || |||| || |||| ||| || |||| ||||||||| |
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| T |
44468079 |
tctcatttgcagccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatacaacacgtccccaagtatctcgccgtcatcaggaag |
44467980 |
T |
|
| Q |
102 |
gacggtttctggatgaagcagcatcttttgacagatagaagcggcttggtgggtcatatcagtgatacatcttgtgatcaaaagagctttcagtgtaaag |
201 |
Q |
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|| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||| ||||| |||||| ||||| ||| ||| | |
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| T |
44467979 |
gatggtttctggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtcaaaaaagcttgcagcgtatgg |
44467880 |
T |
|
| Q |
202 |
ctgtatgtatcccgattcggca |
223 |
Q |
| |
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| |||||||| ||||||||| |
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| T |
44467879 |
atatatgtatcttgattcggca |
44467858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 44459725 - 44459645
Alignment:
| Q |
121 |
agcatcttttgacagatagaagcggcttggtgggtcatatcagtgatacatcttgtgatcaaaagagctttcagtgtaaag |
201 |
Q |
| |
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|||||||| |||||||||||||| ||||| ||| |||||| ||| |||| | ||| |||||||||||| ||| |||||| |
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| T |
44459725 |
agcatcttctgacagatagaagctgcttgatggatcatatgagtactacaggtcgtggtcaaaagagcttgcagagtaaag |
44459645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 44467258 - 44467178
Alignment:
| Q |
121 |
agcatcttttgacagatagaagcggcttggtgggtcatatcagtgatacatcttgtgatcaaaagagctttcagtgtaaag |
201 |
Q |
| |
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|||||||| |||||||||||||| ||||| ||| |||||| ||| |||| | ||| |||||||||||| ||| |||||| |
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| T |
44467258 |
agcatcttctgacagatagaagctgcttgatggatcatatgagtactacaggtcgtggtcaaaagagcttgcagagtaaag |
44467178 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 46359416 - 46359195
Alignment:
| Q |
2 |
tctcatttgcagccatatagagaacataggcttctttaatcatannnnnnngagaaaacaaacttaacaagtggccaattatgtcaccgttatcaggaag |
101 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||||||||||| | |||| || |||| || |||| ||| || |||| ||||||||| |
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| T |
46359416 |
tctcatttgcagccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatacaacacgtccccaagtatctcgccgtcatcaggaag |
46359317 |
T |
|
| Q |
102 |
gacggtttctggatgaagcagcatcttttgacagatagaagcggcttggtgggtcatatcagtgatacatcttgtgatcaaaagagctttcagtgtaaag |
201 |
Q |
| |
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|| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||| ||||| |||||| ||||| ||| ||| | |
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| T |
46359316 |
gatggtttctggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtcaaaaaagcttgcagcgtatgg |
46359217 |
T |
|
| Q |
202 |
ctgtatgtatcccgattcggca |
223 |
Q |
| |
|
| |||||||| ||||||||| |
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| T |
46359216 |
atatatgtatcttgattcggca |
46359195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 38604864 - 38605026
Alignment:
| Q |
1 |
ttctcatttgcagccatatagagaacataggcttctttaatcatannnnnnngagaaaacaaacttaacaagtggccaattatgtcaccgttatcaggaa |
100 |
Q |
| |
|
||||| |||||||||| ||||| | |||| ||||||||||||||| |||| || || ||||||| |||||||| ||||| | |||||||| |
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|
| T |
38604864 |
ttctcctttgcagccagatagatagcatatgcttctttaatcatattatttttagaagaccaaactaacaagacaccaattatttcaccatcatcaggaa |
38604963 |
T |
|
| Q |
101 |
ggacggtttctggatgaagcagcatcttttgacagatagaagcggcttggtgggtcatatcag |
163 |
Q |
| |
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||| ||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| |
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| T |
38604964 |
ggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcag |
38605026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 40180362 - 40180510
Alignment:
| Q |
1 |
ttctcatttgcagccatatagagaacataggcttctttaatcatannnnnnngagaaaacaaacttaacaagtggccaattatgtcaccgttatcaggaa |
100 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||||||||||||||| ||||||| || |||||||| | |||| ||| | ||| | |||||||| |
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| T |
40180362 |
ttctcatttgctgcccgatagagagcataggcttctttaatcatattatttttagaaaaccaagttaacaagcgaccaagtatcttaccatcatcaggaa |
40180461 |
T |
|
| Q |
101 |
ggacggtttctggatgaagcagcatcttttgacagatagaagcggcttg |
149 |
Q |
| |
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||| || ||||| ||||||| |||||||||||| || ||||||||||| |
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| T |
40180462 |
ggagagtatctggttgaagcaccatcttttgacatatggaagcggcttg |
40180510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 38605675 - 38605758
Alignment:
| Q |
118 |
agcagcatcttttgacagatagaagcggcttggtgggtcatatcagtgatacatcttgtgatcaaaagagctttcagtgtaaag |
201 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||| | ||||||| |||| ||||| |||||||||||| ||||||||| |
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| T |
38605675 |
agcagcaagttttgacagatagaagaggcttggtggatgatatcagcactacacgttgtggtcaaaagagcttgaagtgtaaag |
38605758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 411089 - 411037
Alignment:
| Q |
97 |
ggaaggacggtttctggatgaagcagcatcttttgacagatagaagcggcttg |
149 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
411089 |
ggaaggagggtttctggatgaagcagcatcttttgacagatagaagccgcttg |
411037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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