View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11701_low_37 (Length: 231)
Name: NF11701_low_37
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 13418131 - 13417915
Alignment:
| Q |
1 |
atgcacacaagtcacaaatgtcagccttcattaatatcaatgatcatcacatcattgagcaactttatttttgttaaattgaatgattgaatcaaatact |
100 |
Q |
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| T |
13418131 |
atgcacacaagtcacacatgtcagccttcattaatctcaatgatcatcacatcaatgagcaactttatatttgttaaattgaatgattgaatcaaatact |
13418032 |
T |
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| Q |
101 |
acaatcttattgaactttgaatacttgcctgttagttccaaaaatcattgacaagcaatcttggtgtcaaagctacaaaggcatgttgcaaatgcttcaa |
200 |
Q |
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| T |
13418031 |
acaatcttattgaactttgaatacttgcctgttagttccataaatcattgacaagcaatcttggtgtcaaagctacaaaggcatgttgcaaatgcttcaa |
13417932 |
T |
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| Q |
201 |
cgtcccaaacagttcct |
217 |
Q |
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| T |
13417931 |
cgtcccaaacggttcct |
13417915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 13424333 - 13424179
Alignment:
| Q |
1 |
atgcacacaagtcacaaatgtcagccttcattaatatcaatgatcatcacatcattgagcaactttatttttgttaaattgaatgattgaatcaaatact |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13424333 |
atgcacacaagtcacacatgtcagccttcattaatatcaacgatcatcacatcaatgagcaactttatttttgttaaattgaatgattgaatcaaatact |
13424234 |
T |
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| Q |
101 |
acaatcttattgaactttgaatacttgcctgttagttccaaaaatcattgacaag |
155 |
Q |
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| T |
13424233 |
acaatcttattgaactttgagtacttgcttgttagttccataaatcatagacaag |
13424179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 13423645 - 13423578
Alignment:
| Q |
150 |
gacaagcaatcttggtgtcaaagctacaaaggcatgttgcaaatgcttcaacgtcccaaacagttcct |
217 |
Q |
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| T |
13423645 |
gacaagcaatcttagtgtcaaagctacaaaggcatgttgcaaatgcatcaaagtcccaaacagttcct |
13423578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 39942758 - 39942868
Alignment:
| Q |
86 |
attgaatcaaatactacaatcttattgaactttgaatacttgcctgttagttccaaaaatcattgacaagcaatcttggtgtcaaagctacaaaggcatg |
185 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||| |||||| ||||| | ||||||||||||||||||||||| | ||||||| |
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| T |
39942758 |
attgaatcaaatactacaatcttgttgcactttgaatacttgcct----gttccagcaatcactcgcaagcaatcttggtgtcaaagctgctaaggcata |
39942853 |
T |
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| Q |
186 |
ttgcaaatgcttcaa |
200 |
Q |
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| T |
39942854 |
ttgcaaatgcttcaa |
39942868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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