View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11701_low_38 (Length: 229)
Name: NF11701_low_38
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_low_38 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 22669599 - 22669377
Alignment:
| Q |
7 |
atttgcacttttaacattaggtggatttcttttaaacattgttgagtataacatcgcatttccgcctgtcnnnnnnngaagggaccatgatacttcttta |
106 |
Q |
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| T |
22669599 |
atttgcactttgaacattaggtggatttcttttaaacattgttgagtataacatcgcatttccgcctgtctttttttgaagggaccatgatatttcttta |
22669500 |
T |
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| Q |
107 |
ccatgtcatgagcaaccatttttgctaagcttccatgttaacatgcagaccaagcaggccacataatgctcttcaaaaccttatatgttgtctaagatta |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
22669499 |
ccatgtcatgagcaaccatttttgctaagcttccatgttaacatgcagaccaagcaggccacatactgcccttcaaaaccttatatgttgtctaagatta |
22669400 |
T |
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| Q |
207 |
ttgacaatttcaatatgcactat |
229 |
Q |
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||||||| ||||||||||||||| |
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| T |
22669399 |
ttgacaacttcaatatgcactat |
22669377 |
T |
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