View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11701_low_39 (Length: 225)

Name: NF11701_low_39
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11701_low_39
NF11701_low_39
[»] chr2 (2 HSPs)
chr2 (13-215)||(13945111-13945313)
chr2 (13-215)||(14086300-14086502)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 13945313 - 13945111
Alignment:
Q  13 gacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcattgcttcg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13945313 gacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcattgcttcg 13945214  T
Q  113 ttgaacatccttaagtttttgaaacttaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaacgaatcttcgtgtggtcccctttgc 212  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||    
T  13945213 ttgaacatccttaagtttttgaaacctaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaatgaatcttcctgtgatcccctttgc 13945114  T
Q  213 ttc 215  Q
    |||    
T  13945113 ttc 13945111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 14086502 - 14086300
Alignment:
Q  13 gacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcattgcttcg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14086502 gacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcattgcttcg 14086403  T
Q  113 ttgaacatccttaagtttttgaaacttaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaacgaatcttcgtgtggtcccctttgc 212  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||    
T  14086402 ttgaacatccttaagtttttgaaacctaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaatgaatcttcctgtgatcccctttgc 14086303  T
Q  213 ttc 215  Q
    |||    
T  14086302 ttc 14086300  T

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