View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11701_low_4 (Length: 517)
Name: NF11701_low_4
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 39 - 497
Target Start/End: Complemental strand, 34727926 - 34727469
Alignment:
| Q |
39 |
tgtaactgtgtctttatttaaggaacaatcagtaactgtttagtatatgttttgttttataagattaatccatatgactctatgctgcaattgtgcattt |
138 |
Q |
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| T |
34727926 |
tgtaactgtgtctttgattaagtaacaatcagtaactgtttagtatatgttttgttttataagattaatccatatgactctatgctgcaattgtgcattt |
34727827 |
T |
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| Q |
139 |
gattcaatagcaatcactaactgttgagttgagtacaagttgtttttgtatgattaatccatttttcttgccttggcaagtaataatggtgttgattatt |
238 |
Q |
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| T |
34727826 |
gattcaatagcaatcactaactgttgagttgagtacaagttgtttttgtatgattaatccatttttcttgccttggcaagtaataatggtgttgattatt |
34727727 |
T |
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| Q |
239 |
tnnnnnnnnntaaatgaaaaggttcacactttttagatgttttttaagatttctctactgtatacatatatgtatattctttgtgcattttctgaatcat |
338 |
Q |
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| T |
34727726 |
tttaaaaaaataaatgaaaaggttcacactttt-agatgttttttaagatttctctactgtatacatatatgtatattctttgtgcattttctgaatcat |
34727628 |
T |
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| Q |
339 |
tgatgcggtttataagtagtttcatttctttgacttgttaaaatgtctataaaaccttgttatacttttccttgtttctagaaatactacaacattacat |
438 |
Q |
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| T |
34727627 |
tgatgcggtttataagtagtttcatttctttgacttgttaaaatgtctataaaaccttgttatacttttccttgtttctagaaatactacaacattacat |
34727528 |
T |
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| Q |
439 |
tgataatctcatttggcttatactttgcagattagattacctaatttctaagcttttct |
497 |
Q |
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| T |
34727527 |
tgataatctcatttggcttatactttgcagattagattacctaatttctaagcttttct |
34727469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 369 - 501
Target Start/End: Complemental strand, 34731828 - 34731695
Alignment:
| Q |
369 |
tgacttgttaaaatgtctataaaaccttgttatacttttccttgtttctagaaatactacaacatta-cattgataatctcatttggcttatactttgca |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
34731828 |
tgacttgttaaaatgtctataaaaccttgttatacttttccttgtttctagaaaagcaacaacattagcattgataatctcatttggtttatactttgca |
34731729 |
T |
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| Q |
468 |
gattagattacctaatttctaagcttttctgatg |
501 |
Q |
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| T |
34731728 |
gattagattacctaatttctaagcttttctgatg |
34731695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 322 - 501
Target Start/End: Complemental strand, 34722599 - 34722419
Alignment:
| Q |
322 |
tgcattttctgaatcattgatgcggtttataagtagtttcatttctttgacttgttaaaatgtctataaaaccttgttatacttttccttgtttctagaa |
421 |
Q |
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| T |
34722599 |
tgcattttatgaataatttatgctgtttataagtggttttatttcgttgatttgttaaaatgtctataaaaccttgttataattttccttgtttctagaa |
34722500 |
T |
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| Q |
422 |
atactacaacatta-cattgataatctcatttggcttatactttgcagattagattacctaatttctaagcttttctgatg |
501 |
Q |
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| T |
34722499 |
aagcaacaaaactagtatcagcaatctcatttgattttaactttgcagattagattccctaacttctgagcttttctgatg |
34722419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 34732374 - 34732319
Alignment:
| Q |
116 |
ctctatgctgcaattgtgcatttgattcaatagcaatcactaactgttgagttgagt |
172 |
Q |
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| T |
34732374 |
ctctatgctgcaacagtgc-tttgattcaataacaatcactaactgttgagttgagt |
34732319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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