View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11701_low_7 (Length: 496)
Name: NF11701_low_7
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 7 - 482
Target Start/End: Complemental strand, 11029315 - 11028840
Alignment:
| Q |
7 |
tgagatgaataggtaaaggaatgtaacctgaaattcaattgatcgaaacagatggtttcgaccaaacataactatgtagttgaggggagctgcaataagc |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11029315 |
tgagctgaataggtaaaggaatgtaacctgaaattcaattgatctaaacagatggtttcgaccaaacataactatgtagttgaggggagctgcaataagc |
11029216 |
T |
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| Q |
107 |
tgcaaagacaagtgaaataatgtcatgtactttccaacaaaaatcttggtttgcaataatcatgcaggttcaaacctaagtgctaatactctcttccttc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11029215 |
tgcaaagacaagtgaaataatgtcatgtactttccaacaaaaatcttggtttgcaataatcatgcaggttcaaacctaagtgctaatactctcttccttc |
11029116 |
T |
|
| Q |
207 |
cttatctaaaactctataccttcaacaagccctttttaggtgtcacctttagtattagtacaaacatctccttctaagttctaatggatatcatgtatat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11029115 |
cttatctaaaactctataccttcaacaagccctttttaggtgtcacctttagtattagtacaaacatctccttctaagttctaatggatatcatgtatat |
11029016 |
T |
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| Q |
307 |
ttgacgtctaaaatcgtgacttattacgtttaaaatcatgattaattaattatctttagtgcttgattaatgagatttgaaatcttgttatatttattaa |
406 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11029015 |
ttgacgtttaaaatcgtgacttattacgtttaaaatcatgattaattaattatctttagtgcttgattaatgagatttgaaatcttgttatatttattaa |
11028916 |
T |
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| Q |
407 |
catcaacataactaataatatatatacattgttgtcaaatttgtgtgtcaaaatatcatttatgtcattcaaaatc |
482 |
Q |
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| T |
11028915 |
catcaacataactaataatatatatgcattgtagtcaaatttgtgtgtcaaaatatcatttatgtcattcaaaatc |
11028840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 470
Target Start/End: Original strand, 44962070 - 44962102
Alignment:
| Q |
438 |
ttgtcaaatttgtgtgtcaaaatatcatttatg |
470 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
44962070 |
ttgtcaaatttgtgtgtcaaaatatcatttatg |
44962102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 467
Target Start/End: Complemental strand, 10890168 - 10890136
Alignment:
| Q |
435 |
ttgttgtcaaatttgtgtgtcaaaatatcattt |
467 |
Q |
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| T |
10890168 |
ttgttgtcaaatttgtgtgtcaacatatcattt |
10890136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 472
Target Start/End: Original strand, 34584866 - 34584898
Alignment:
| Q |
440 |
gtcaaatttgtgtgtcaaaatatcatttatgtc |
472 |
Q |
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| T |
34584866 |
gtcaaatttgtatgtcaaaatatcatttatgtc |
34584898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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