View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11701_low_9 (Length: 467)
Name: NF11701_low_9
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 20 - 458
Target Start/End: Complemental strand, 1717381 - 1716942
Alignment:
| Q |
20 |
cattactacaatatgtattcggataaatttaaggaaatgagtgttcaacaaaatattgactacataagaaatgatagagcatgggatcttagtggtgtct |
119 |
Q |
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|||||||||||| |||||||||| ||||| || | |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1717381 |
cattactacaatttgtattcggacaaattcaatggcatgaatgttcaacaaaatattgactacataagaaatgatagagcctgggatcttagtggtgtct |
1717282 |
T |
|
| Q |
120 |
cttcatcaaatgctcttagttttgtaggtaaaaaccaaatccttgccaataatagttaactttattgataattttattagagatcatgttatatattgag |
219 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1717281 |
cttcatcaaatgctcttagttttgtaggtaaataccaaatccttgccaataatagttaactttattgataattttattagagatcatattatatattgag |
1717182 |
T |
|
| Q |
220 |
gatatctaaatgtttttacttttctatttgggtaggggaatggacagctgaatggagtatagaaggggcgcctatgcaagactaccaaagatatgtccaa |
319 |
Q |
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| T |
1717181 |
gatatctaaatgtttttacttttctatttgggtaggggaatggacagctgaatggagtatacaaggggcacctatgcaagactaccaaagatatgtccaa |
1717082 |
T |
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| Q |
320 |
gcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttgatcgagaatg |
419 |
Q |
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| T |
1717081 |
gcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttgatcgagaatg |
1716982 |
T |
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| Q |
420 |
gttacataaagctctagatgc-aaggggttcttctctctc |
458 |
Q |
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| T |
1716981 |
gttacataaagctctagatgcaaaggggttcttctttctc |
1716942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 209 - 451
Target Start/End: Complemental strand, 1738598 - 1738356
Alignment:
| Q |
209 |
tatatattgaggatatctaaatgtttttacttttctatttgggtaggggaatggacagctgaatggagtatagaaggggcgcctatgcaagactaccaaa |
308 |
Q |
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| T |
1738598 |
tatatattgaggatatctaaatgattttacttttctattttggtaggggaatggacggctgaatggagcatacaaggtgcgtctatgcaagactaccaaa |
1738499 |
T |
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| Q |
309 |
gatatgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggtt |
408 |
Q |
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| T |
1738498 |
gatatgtccaaacacaaatggatgtatattctcgtgcaacatttggatgggctttttggtcctataaatgtcagaataacaaatggagtctcaagtggtt |
1738399 |
T |
|
| Q |
409 |
gatcgagaatggttacataaagctctagatgcaaggggttctt |
451 |
Q |
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| T |
1738398 |
gatcgaaaatggttacataaagctctagatgtaaggggttctt |
1738356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 291 - 448
Target Start/End: Complemental strand, 1753662 - 1753505
Alignment:
| Q |
291 |
ctatgcaagactaccaaagatatgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataacca |
390 |
Q |
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|||||||||||||||||||||||| |||||||||| | ||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
1753662 |
ctatgcaagactaccaaagatatggccaagcacaactagatgtgtattctcgtgcaacatttggatgggcttattgggcatacaaatgtcaatataacca |
1753563 |
T |
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| Q |
391 |
ttggagtctcaagtggttgatcgagaatggttacataaagctctagatgcaaggggtt |
448 |
Q |
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| T |
1753562 |
ttggagtctcaagtggatgatcgagaatggttacataaagctctagatgtaaggggtt |
1753505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 1738878 - 1738727
Alignment:
| Q |
20 |
cattactacaatatgtattcggataaatttaaggaaatgagtgttcaacaaaatattgactacataagaaatgatagagcatgggatcttagtggtgtct |
119 |
Q |
| |
|
|||||||||||||||| || ||| ||||| || | |||| |||||||||||||||||||| |||||||||||| ||||| |||||||||||||| ||| |
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| T |
1738878 |
cattactacaatatgttttgggacaaattcaatggcatgaatgttcaacaaaatattgacttcataagaaatgacagagccggggatcttagtggtttct |
1738779 |
T |
|
| Q |
120 |
cttcatcaaatgctcttagttttgtaggtaaa--aaccaaatccttgccaat |
169 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1738778 |
cttcttcaaatgctcttagttttgtaggtaaaataaccaaatccttgccaat |
1738727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 1748733 - 1748591
Alignment:
| Q |
20 |
cattactacaatatgtattcggataaatttaaggaaatgagtgttcaacaaaatattgactacataagaaatgatagagcatgggatcttagtggtgtct |
119 |
Q |
| |
|
|||||||||||||||| || ||| ||||| || | |||| ||||||||||||||| |||| |||||||||||| ||||||| |||||| |||||| | |
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| T |
1748733 |
cattactacaatatgttttgggaaaaattcaatggcatgaatgttcaacaaaatatcgacttcataagaaatgaaagagcatcagatcttgctggtgtat |
1748634 |
T |
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| Q |
120 |
cttcatcaaatgctcttagttttgtaggtaaaaaccaaatcct |
162 |
Q |
| |
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||||| |||||||||||| |||| ||||||||||||||||||| |
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| T |
1748633 |
cttcaacaaatgctcttacttttataggtaaaaaccaaatcct |
1748591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 316 - 432
Target Start/End: Complemental strand, 1748381 - 1748265
Alignment:
| Q |
316 |
ccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttgatcgag |
415 |
Q |
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|||||| ||| ||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| | ||| | |||||| || |||||| |||||||| |
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| T |
1748381 |
ccaagcccaattggatgtgtattctcgggcaacatttggatgggcttattggtcctacaaatgtcagtttaatcgttggagccttaagtggatgatcgag |
1748282 |
T |
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| Q |
416 |
aatggttacataaagct |
432 |
Q |
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| T |
1748281 |
aatggttacataaagct |
1748265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 1754049 - 1753919
Alignment:
| Q |
20 |
cattactacaatatgtattcggataaatttaaggaaatgagtgttcaacaaaatattgactacataagaaatgatagagcatgggatcttagtggtgtct |
119 |
Q |
| |
|
|||||||||||| | |||||||| ||||| | | |||| |||||||||||||||||||||||||| || || ||||| | |||||||| || |||| |
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| T |
1754049 |
cattactacaatctttattcggacaaattcactaacatgaatgttcaacaaaatattgactacataaacaacgaaagagcctcagatcttagcggcgtct |
1753950 |
T |
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| Q |
120 |
cttcatcaaatgctcttagttttgtaggtaa |
150 |
Q |
| |
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||||| |||| |||||||||||||||||||| |
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| T |
1753949 |
cttcaacaaacgctcttagttttgtaggtaa |
1753919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 38087047 - 38086985
Alignment:
| Q |
347 |
acatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttg |
409 |
Q |
| |
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|||||||||||||| |||||||| ||||||||| | | |||| | |||||||| ||||||||| |
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| T |
38087047 |
acatttggatgggcatattgggcttacaaatgtgactctaacaactggagtcttaagtggttg |
38086985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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