View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11702_high_2 (Length: 658)
Name: NF11702_high_2
Description: NF11702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11702_high_2 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 365 - 658
Target Start/End: Complemental strand, 31793531 - 31793238
Alignment:
| Q |
365 |
gtgcattttaaaatttgctttcaaatgtatgcatcatgttatgttacgtgaatatatgatatgttagaatgcatatttgaatttgtgattttcaactttt |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31793531 |
gtgcattttaaaatttgctttcaaatgtatgcatcatgttatgttacgtgaagatatgatatgttagaatgcagatttgaatttgtgattttcaactttt |
31793432 |
T |
|
| Q |
465 |
ctatggttgtataataaaataatatttgttttagaaattacaatatataagtgtggttgagatgattgcttttattatattattctgagtggagtattat |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31793431 |
ctatggttgtataataaaataatatttgttttagaaataacaatatataagtgtggttgagatgattgtttttattatattattctgagtggagtattat |
31793332 |
T |
|
| Q |
565 |
tgttttaattgacaaataagagtttaattaattgaaacttaagagatcttattttaataaatttatgatttgctatgatatacttgtaattgag |
658 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31793331 |
tgttttaattgacaaacaagagtttaattaattgaaacttaagagatcttattttaataaatttatgatttgctatgatatacttgtaattgag |
31793238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 123 - 284
Target Start/End: Complemental strand, 31793780 - 31793612
Alignment:
| Q |
123 |
gtggtattgatatcggagttagtgctggtataggtcgtcgtc------gtggaggtagtgctgcttcttcttcatctcgttttgcaggtagtgatgttac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| || | || || || ||||||||| | ||||||||||||| |
|
|
| T |
31793780 |
gtggtattgatatcggagttagtgctggtataggtcgtcgtcctggtcgtggaggtagtggtgttgctgctacaactcgttttggacgtagtgatgttac |
31793681 |
T |
|
| Q |
217 |
taaagcaggaagcactcatcaacaagaatatgtaccatgagatctataagcttt-atatggatgcatgc |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31793680 |
taaagcaggaagcactcatcaacaagaatatgtaccatgagatctataagctttaatatggatgcatgc |
31793612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 31793858 - 31793775
Alignment:
| Q |
15 |
cagagacgaggattaggtatggaataactcgttctgaagatagtggtgttgctgaaacaaacggtattgcgggagatagtggta |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
31793858 |
cagagacgaggattaggtatggaataactcgttcggtagatagtggtgttgctaaaacaaatggtattgcgggagatagtggta |
31793775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University