View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11702_high_23 (Length: 219)
Name: NF11702_high_23
Description: NF11702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11702_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 11665974 - 11665835
Alignment:
| Q |
1 |
tcggtcacaaatctgagtatcatggtttaattaaggaggcaacctcccagtcatcgaggggtctggcctttatatagtctaaaatcttccttaaacactc |
100 |
Q |
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| T |
11665974 |
tcggtcacaaatctgagtatcatggt----ctaaggaggaaagctcccagtcatcgaggggtctggcctttatatagtctaaaatcttccttaaacactc |
11665879 |
T |
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| Q |
101 |
aaaattagagtatagagatcaaagaaacataacatcatttgcta |
144 |
Q |
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| T |
11665878 |
aaaattagagtatagagatcaaagaaacataacatcatttgcta |
11665835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 11665842 - 11665798
Alignment:
| Q |
154 |
atttgctagcataagaggggatatcttggtttctacctataaagt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11665842 |
atttgctagcataagaggggatatcttggtttctacctataaagt |
11665798 |
T |
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