View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11702_low_14 (Length: 344)
Name: NF11702_low_14
Description: NF11702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11702_low_14 |
 | |
|
| [»] scaffold0062 (3 HSPs) |
| | |
|
| [»] scaffold0443 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0062 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 2 - 326
Target Start/End: Original strand, 47900 - 48224
Alignment:
| Q |
2 |
gtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggagaactcataaga |
101 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47900 |
gtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggagaactcataaga |
47999 |
T |
|
| Q |
102 |
aaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaaagaca |
201 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48000 |
aaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaaagaca |
48099 |
T |
|
| Q |
202 |
taattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatgaatacggtactga |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48100 |
taattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatgaatacggtactga |
48199 |
T |
|
| Q |
302 |
tgttaaactcttgccaggagtcagc |
326 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
48200 |
tgttaaactcttgccaggagtcagc |
48224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 2 - 326
Target Start/End: Original strand, 60439 - 60763
Alignment:
| Q |
2 |
gtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggagaactcataaga |
101 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
60439 |
gtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggagaactcataaga |
60538 |
T |
|
| Q |
102 |
aaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaaagaca |
201 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
60539 |
aaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaaagaca |
60638 |
T |
|
| Q |
202 |
taattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatgaatacggtactga |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
60639 |
taattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatgaatacggtactga |
60738 |
T |
|
| Q |
302 |
tgttaaactcttgccaggagtcagc |
326 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
60739 |
tgttaaactcttgccaggagtcagc |
60763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 2 - 326
Target Start/End: Original strand, 72558 - 72882
Alignment:
| Q |
2 |
gtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggagaactcataaga |
101 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
72558 |
gtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggagaactcataaga |
72657 |
T |
|
| Q |
102 |
aaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaaagaca |
201 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
72658 |
aaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaaagaca |
72757 |
T |
|
| Q |
202 |
taattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatgaatacggtactga |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
72758 |
taattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatgaatacggtactga |
72857 |
T |
|
| Q |
302 |
tgttaaactcttgccaggagtcagc |
326 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
72858 |
tgttaaactcttgccaggagtcagc |
72882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 2 - 326
Target Start/End: Original strand, 18691249 - 18691573
Alignment:
| Q |
2 |
gtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggagaactcataaga |
101 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18691249 |
gtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggagaactcataaga |
18691348 |
T |
|
| Q |
102 |
aaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaaagaca |
201 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18691349 |
aaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaaagaca |
18691448 |
T |
|
| Q |
202 |
taattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatgaatacggtactga |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18691449 |
taattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatgaatacggtactga |
18691548 |
T |
|
| Q |
302 |
tgttaaactcttgccaggagtcagc |
326 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
18691549 |
tgttaaactcttgccaggagtcagc |
18691573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 2 - 326
Target Start/End: Original strand, 15698988 - 15699312
Alignment:
| Q |
2 |
gtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggagaactcataaga |
101 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15698988 |
gtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggagaactcataaga |
15699087 |
T |
|
| Q |
102 |
aaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaaagaca |
201 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15699088 |
aaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaaagaca |
15699187 |
T |
|
| Q |
202 |
taattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatgaatacggtactga |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15699188 |
taattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatgaatacggtactga |
15699287 |
T |
|
| Q |
302 |
tgttaaactcttgccaggagtcagc |
326 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
15699288 |
tgttaaactcttgccaggagtcagc |
15699312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 2 - 326
Target Start/End: Original strand, 15711527 - 15711851
Alignment:
| Q |
2 |
gtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggagaactcataaga |
101 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15711527 |
gtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggagaactcataaga |
15711626 |
T |
|
| Q |
102 |
aaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaaagaca |
201 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15711627 |
aaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaaagaca |
15711726 |
T |
|
| Q |
202 |
taattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatgaatacggtactga |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15711727 |
taattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatgaatacggtactga |
15711826 |
T |
|
| Q |
302 |
tgttaaactcttgccaggagtcagc |
326 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
15711827 |
tgttaaactcttgccaggagtcagc |
15711851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 2 - 326
Target Start/End: Original strand, 15724005 - 15724329
Alignment:
| Q |
2 |
gtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggagaactcataaga |
101 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15724005 |
gtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggagaactcataaga |
15724104 |
T |
|
| Q |
102 |
aaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaaagaca |
201 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15724105 |
aaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaaagaca |
15724204 |
T |
|
| Q |
202 |
taattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatgaatacggtactga |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15724205 |
taattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatgaatacggtactga |
15724304 |
T |
|
| Q |
302 |
tgttaaactcttgccaggagtcagc |
326 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
15724305 |
tgttaaactcttgccaggagtcagc |
15724329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0443 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0443
Description:
Target: scaffold0443; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 8901 - 8933
Alignment:
| Q |
17 |
cataattgatggtattgatattaactatgagta |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
8901 |
cataattgatggtattgatattaactatgagta |
8933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University