View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11702_low_15 (Length: 329)
Name: NF11702_low_15
Description: NF11702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11702_low_15 |
 | |
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| [»] chr6 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (10 HSPs) |
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| [»] chr5 (6 HSPs) |
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| [»] chr4 (5 HSPs) |
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| [»] chr3 (7 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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| [»] scaffold0703 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 329
Target Start/End: Original strand, 10160040 - 10160353
Alignment:
| Q |
15 |
agggatgttccaagaattccaacccgggttcaacaaataattaactgtaatatcctcatggtgcaccaacggcggagcagtcagtttaagattagaaagg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||| |||| |
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|
| T |
10160040 |
agggatgttccaagaattccaacccgggttcaacaaataattaactgtaatatcctcatggtgcaccaacggcggagtagtcggtttgagattaggaagg |
10160139 |
T |
|
| Q |
115 |
ggtgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactc |
214 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10160140 |
g-tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactc |
10160238 |
T |
|
| Q |
215 |
ctccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcaccggtagtatttagctttgaggatccttgatagtaaagaggttgagt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10160239 |
ctccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagt |
10160338 |
T |
|
| Q |
315 |
cggataagagtttcc |
329 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10160339 |
cggataagagtttcc |
10160353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 237
Target Start/End: Complemental strand, 16862135 - 16862015
Alignment:
| Q |
117 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
216 |
Q |
| |
|
|||||||||||||||| |||||| ||| || | ||||||| ||| ||||||||||||| ||||| |||||||| ||||| ||||||| |||||||| |
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|
| T |
16862135 |
tgcgaatccaaggcattggccacacatttatatttgaaccattaccaatcttccatctatagcccaacgtaagtaatgattggttactccaaagactcct |
16862036 |
T |
|
| Q |
217 |
ccatgtataacttggattatg |
237 |
Q |
| |
|
|||||| || ||||||||||| |
|
|
| T |
16862035 |
ccatgtgtagcttggattatg |
16862015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 21731064 - 21731134
Alignment:
| Q |
167 |
ttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatg |
237 |
Q |
| |
|
||||||||||| ||||||||||| | |||||| |||||||| |||||||||||| | || ||||||||||| |
|
|
| T |
21731064 |
ttccatctatggcccaaggtaagaagagattgagtactccaaagactcctccatatgtagcttggattatg |
21731134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 329
Target Start/End: Original strand, 9181816 - 9182129
Alignment:
| Q |
15 |
agggatgttccaagaattccaacccgggttcaacaaataattaactgtaatatcctcatggtgcaccaacggcggagcagtcagtttaagattagaaagg |
114 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| ||||||| |||| |
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|
| T |
9181816 |
agggatgttccaagaattccaacacgggttcaacaaataattaactgtaatatcctcatggtgcaccaacggcgaagtagtcggtttgagattaggaagg |
9181915 |
T |
|
| Q |
115 |
ggtgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactc |
214 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9181916 |
g-tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactc |
9182014 |
T |
|
| Q |
215 |
ctccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcaccggtagtatttagctttgaggatccttgatagtaaagaggttgagt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9182015 |
ctccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagt |
9182114 |
T |
|
| Q |
315 |
cggataagagtttcc |
329 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9182115 |
cggataagagtttcc |
9182129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 329
Target Start/End: Complemental strand, 11626457 - 11626144
Alignment:
| Q |
15 |
agggatgttccaagaattccaacccgggttcaacaaataattaactgtaatatcctcatggtgcaccaacggcggagcagtcagtttaagattagaaagg |
114 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| ||||||| |||| |
|
|
| T |
11626457 |
agggatgttccaagaattccaactcgggttcaacaaataattaactgtaatatcctcatggtgcaccaacggcgtagtagtcggtttgagattaggaagg |
11626358 |
T |
|
| Q |
115 |
ggtgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactc |
214 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11626357 |
g-tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactc |
11626259 |
T |
|
| Q |
215 |
ctccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcaccggtagtatttagctttgaggatccttgatagtaaagaggttgagt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11626258 |
ctccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagt |
11626159 |
T |
|
| Q |
315 |
cggataagagtttcc |
329 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11626158 |
cggataagagtttcc |
11626144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 121 - 329
Target Start/End: Complemental strand, 50181727 - 50181519
Alignment:
| Q |
121 |
aatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccat |
220 |
Q |
| |
|
||||||||||||| ||||| |||| |||||||||| | || |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50181727 |
aatccaaggcatattccacacattattttgagaaccgtttccaatcttccatctatggcctaaggtaagtaaagattgcgtactccatagactcctccat |
50181628 |
T |
|
| Q |
221 |
gtataacttggattatggccgaggttggcatccaaaaaatcccttcaccggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggata |
320 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||| | || ||||| ||||||||||| |
|
|
| T |
50181627 |
gtataacttggattgtggccgagattggcatccaaaaaatcccttcggggaaagtatttagctttgaggatccttgagaatagagaggatgagtcggata |
50181528 |
T |
|
| Q |
321 |
agagtttcc |
329 |
Q |
| |
|
||||||| |
|
|
| T |
50181527 |
gaagtttcc |
50181519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 237
Target Start/End: Complemental strand, 20128527 - 20128409
Alignment:
| Q |
119 |
cgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctcc |
218 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| | |||||||| |||||||||||||| ||||||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
20128527 |
cgaatccaaggcatactccacatattaatttttgtgccatcaccaatcttccatctatgtcccaaggtaagaagagattgggtactccatagactcctcc |
20128428 |
T |
|
| Q |
219 |
atgtataacttggattatg |
237 |
Q |
| |
|
| || || ||||||||||| |
|
|
| T |
20128427 |
aagtgtagcttggattatg |
20128409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 152 - 288
Target Start/End: Complemental strand, 44138590 - 44138454
Alignment:
| Q |
152 |
gaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggttggcat |
251 |
Q |
| |
|
||||||| ||| |||||||||||||| ||||||||||||||| ||||| ||||||||| || ||||| || || ||||||||||||||||| ||||| |
|
|
| T |
44138590 |
gaaccataaccaatcttccatctatgtcccaaggtaagtaaatgttgtgcactccataggcttctccaggtgtagcttggattatggccgagaggggcat |
44138491 |
T |
|
| Q |
252 |
ccaaaaaatcccttcaccggtagtatttagctttgag |
288 |
Q |
| |
|
|||| |||||||||| | || | |||||||||||||| |
|
|
| T |
44138490 |
ccaagaaatcccttcgcgggaaatatttagctttgag |
44138454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 164 - 290
Target Start/End: Original strand, 51493001 - 51493127
Alignment:
| Q |
164 |
atcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggttggcatccaaaaaatccc |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| || |||||||||||||| || ||||||||| |||||| |
|
|
| T |
51493001 |
atcttccatctatgacccaaggtaagtaaagattgagtgctccaaagacccctccatgcgtagcttggattatggccaagaggggcatccaagaaatcca |
51493100 |
T |
|
| Q |
264 |
ttcaccggtagtatttagctttgagga |
290 |
Q |
| |
|
||| || |||||||||||||||||| |
|
|
| T |
51493101 |
ttctagggaagtatttagctttgagga |
51493127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 237
Target Start/End: Original strand, 12459969 - 12460089
Alignment:
| Q |
117 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
216 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||| || |||| ||| ||||||||||||| ||||| |||||||| ||||| |||||||| |||||||| |
|
|
| T |
12459969 |
tgcgaatccaaggcattgaccacacatttatttttgagccattaccaatcttccatctatagcccaacgtaagtaatgattgggtactccaaagactcct |
12460068 |
T |
|
| Q |
217 |
ccatgtataacttggattatg |
237 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
12460069 |
ccatgtatagcttggattatg |
12460089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 119 - 237
Target Start/End: Complemental strand, 14647513 - 14647395
Alignment:
| Q |
119 |
cgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctcc |
218 |
Q |
| |
|
|||||||| |||||| ||| | ||| |||| |||||||| || || ||||||||||||||||||||||| | |||||| |||||||| |||||||||| |
|
|
| T |
14647513 |
cgaatccatggcatagaccatacatttatttttgaaccatctccaattttccatctatgacccaaggtaagcagagattgagtactccaaagactcctcc |
14647414 |
T |
|
| Q |
219 |
atgtataacttggattatg |
237 |
Q |
| |
|
|| | || ||||||||||| |
|
|
| T |
14647413 |
atatgtagcttggattatg |
14647395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 27465707 - 27465618
Alignment:
| Q |
136 |
ccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtata |
225 |
Q |
| |
|
||||| |||||| | |||||||||||| || |||||| ||||||||| ||||||||||||| ||||||||||||||| |||| ||||| |
|
|
| T |
27465707 |
ccacacattaatataagaaccatcaccaattttccattcatgacccaaaataagtaaagattgagtactccatagactcttccaagtata |
27465618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 13189541 - 13189635
Alignment:
| Q |
146 |
atttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggcc |
240 |
Q |
| |
|
|||| ||| ||||| || || |||||||||| |||||||||||||||| ||| |||||||| ||||| ||||| || || |||||||||||||| |
|
|
| T |
13189541 |
attttagagccatctccaattttccatctataacccaaggtaagtaaatgttgagtactccaaagacttctccaagtgtagcttggattatggcc |
13189635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 329
Target Start/End: Original strand, 27644548 - 27644755
Alignment:
| Q |
122 |
atccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatg |
221 |
Q |
| |
|
|||||||||||| ||||| ||| |||| ||||||| || |||||||| || || || |||||||| || || |||||||| ||||||||||| | |
|
|
| T |
27644548 |
atccaaggcatagtccacacatttattttggaaccatttccaatcttccacctgtgtcctaaggtaagcaagtgctgggtactccaaagactcctccaag |
27644647 |
T |
|
| Q |
222 |
tataacttggattatggccgaggttggcatccaaaaaatcccttcaccggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggataa |
321 |
Q |
| |
|
|||| ||||||||||| || || ||||||||| |||||||| | | || | ||||| ||||||||||| | | ||||| ||||| ||||||| || |
|
|
| T |
27644648 |
tatagcttggattatgaccaagagaggcatccaagaaatccctacgcgggaaatatttggctttgaggatacgagtaagtaaggaggtagagtcggtcaa |
27644747 |
T |
|
| Q |
322 |
gagtttcc |
329 |
Q |
| |
|
|||||||| |
|
|
| T |
27644748 |
gagtttcc |
27644755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 50181832 - 50181776
Alignment:
| Q |
15 |
agggatgttccaagaattccaacccgggttcaacaaataattaactgtaatatcctc |
71 |
Q |
| |
|
||||||||||||||| |||| | |||| |||||||||||||| || |||| |||||| |
|
|
| T |
50181832 |
agggatgttccaagagttcccatccggattcaacaaataattgaccgtaagatcctc |
50181776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 117 - 329
Target Start/End: Complemental strand, 23150163 - 23149951
Alignment:
| Q |
117 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
216 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||||||||||| || || || ||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23150163 |
tgcggatccaaggcatactccacacattaatttgagaaccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcct |
23150064 |
T |
|
| Q |
217 |
ccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcaccggtagtatttagctttgaggatccttgatagtaaagaggttgagtcg |
316 |
Q |
| |
|
|||||| |||||||||||||| || || |||||||||||||||||||||| | | ||||||||||||||||| ||||| | || |||| |||||| |
|
|
| T |
23150063 |
ccatgtgtaacttggattatgacctagattggcatccaaaaaatcccttcggggaaaatatttagctttgaggattcttgaaaatagggaggacgagtcg |
23149964 |
T |
|
| Q |
317 |
gataagagtttcc |
329 |
Q |
| |
|
||||||||||||| |
|
|
| T |
23149963 |
gataagagtttcc |
23149951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 152 - 290
Target Start/End: Original strand, 42577985 - 42578123
Alignment:
| Q |
152 |
gaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggttggcat |
251 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| || |||||||||||||| || ||||| |
|
|
| T |
42577985 |
gaaccatctccaatcttccatctatgacccaaggtaagtaaagattgagtgctccaaagactcctccatgtgtagcttggattatggccaagaggggcat |
42578084 |
T |
|
| Q |
252 |
ccaaaaaatcccttcaccggtagtatttagctttgagga |
290 |
Q |
| |
|
|||| |||||||||| || |||||||||||| ||||| |
|
|
| T |
42578085 |
ccaagaaatcccttctagggaagtatttagcttcgagga |
42578123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 266
Target Start/End: Complemental strand, 7273889 - 7273766
Alignment:
| Q |
143 |
ttaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccga |
242 |
Q |
| |
|
||||||| |||||||| | |||||||||| ||||||||||||||||||| |||||||||||| || || |||||||| || |||||||||||||||| |
|
|
| T |
7273889 |
ttaattttggaaccatctctaatcttccatccatgacccaaggtaagtaaatgttgtgtactccaaaggcttctccatgtgtagcttggattatggccga |
7273790 |
T |
|
| Q |
243 |
ggttggcatccaaaaaatcccttc |
266 |
Q |
| |
|
| ||||||||| |||||||||| |
|
|
| T |
7273789 |
gagaggcatccaagaaatcccttc |
7273766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 266
Target Start/End: Original strand, 13093636 - 13093780
Alignment:
| Q |
122 |
atccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatg |
221 |
Q |
| |
|
|||||||||||| ||||| |||||||| | ||| ||||| || |||||||||| |||||| ||||| ||| ||| |||||||| ||| ||||||| | |
|
|
| T |
13093636 |
atccaaggcatattccacacattaattttcgtaccgtcaccaattttccatctataacccaaagtaagcaaatgttgagtactccaaagattcctccaag |
13093735 |
T |
|
| Q |
222 |
tataacttggattatggccgaggttggcatccaaaaaatcccttc |
266 |
Q |
| |
|
|| | ||||||||||| |||||| ||||||||| |||||||||| |
|
|
| T |
13093736 |
taaagcttggattatgaccgagggaggcatccaagaaatcccttc |
13093780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 266
Target Start/End: Original strand, 13022112 - 13022256
Alignment:
| Q |
122 |
atccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatg |
221 |
Q |
| |
|
|||||||||||| ||| | |||||||| | ||| ||||| || |||||||||| |||||| ||||| ||| ||| |||||||| ||| ||||||| | |
|
|
| T |
13022112 |
atccaaggcatattccaaacattaattttcgtaccgtcaccaattttccatctataacccaaagtaagaaaatgttgagtactccaaagattcctccaag |
13022211 |
T |
|
| Q |
222 |
tataacttggattatggccgaggttggcatccaaaaaatcccttc |
266 |
Q |
| |
|
|| | ||||||||||| |||||| ||||||||| |||||||||| |
|
|
| T |
13022212 |
taaagcttggattatgaccgagggaggcatccaagaaatcccttc |
13022256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 33496311 - 33496394
Alignment:
| Q |
155 |
ccatcacctatcttccatctatgacccaaggtaagtaaagatt-gtgtactccatagactcctccatgtataacttggattatg |
237 |
Q |
| |
|
||||| || |||||||||||||||||||| || || ||| ||| | ||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
33496311 |
ccatctccaatcttccatctatgacccaaagtgagcaaatatttgagtactccatggactcctccatgtgtagcttggattatg |
33496394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 120 - 327
Target Start/End: Complemental strand, 29843502 - 29843295
Alignment:
| Q |
120 |
gaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctcca |
219 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| |||||| ||| |||||||||| |||||||||||||||| || ||||||||||| | | |||| |
|
|
| T |
29843502 |
gaatccaaggcatactccacacattaatttgagaatcatcactaatcgtccatctatggcccaaggtaagtaaaggttttgtactccatatattgctcct |
29843403 |
T |
|
| Q |
220 |
tgtataacttggattatggccgaggttggcatccaaaaaatcccttcaccggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggat |
319 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||| | | |||||||||| | |||||||||| ||||||||||||| |||||| |
|
|
| T |
29843402 |
tgtataacttggattatgacctaggttggcatccaaaaaatcccttctcgaaaaatatttagcttccaagatccttgatggtaaagaggttgactcggat |
29843303 |
T |
|
| Q |
320 |
aagagttt |
327 |
Q |
| |
|
|||||||| |
|
|
| T |
29843302 |
aagagttt |
29843295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 117 - 329
Target Start/End: Original strand, 12351923 - 12352135
Alignment:
| Q |
117 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
216 |
Q |
| |
|
|||| ||||||||||||| ||||| |||||||||||| || || || || ||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12351923 |
tgcggatccaaggcatactccacacattaatttgagagccgtctccaattttccagctatggcccaaggtaagtaaagattgagtactccatagactcct |
12352022 |
T |
|
| Q |
217 |
ccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcaccggtagtatttagctttgaggatccttgatagtaaagaggttgagtcg |
316 |
Q |
| |
|
|||||| |||||||||||||| || || |||||||||||||||||||||| | | ||||||||||||||||| ||||| | || |||| |||||| |
|
|
| T |
12352023 |
ccatgtgtaacttggattatgacctagattggcatccaaaaaatcccttcggggaaaatatttagctttgaggattcttgaaaatagggaggacgagtcg |
12352122 |
T |
|
| Q |
317 |
gataagagtttcc |
329 |
Q |
| |
|
||||||||||||| |
|
|
| T |
12352123 |
gataagagtttcc |
12352135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 117 - 329
Target Start/End: Complemental strand, 41146648 - 41146436
Alignment:
| Q |
117 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
216 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||| | ||||| || || || ||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41146648 |
tgcggatccaaggcatactccacacattaattagggaaccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcct |
41146549 |
T |
|
| Q |
217 |
ccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcaccggtagtatttagctttgaggatccttgatagtaaagaggttgagtcg |
316 |
Q |
| |
|
|||||| |||||||||||||| || || |||||||||||||||||||||| | | ||||||||||||||||| ||||| | || |||| |||||| |
|
|
| T |
41146548 |
ccatgtgtaacttggattatgacctagattggcatccaaaaaatcccttcggggaaaatatttagctttgaggattcttgaaaatagggaggacgagtcg |
41146449 |
T |
|
| Q |
317 |
gataagagtttcc |
329 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41146448 |
gataagagtttcc |
41146436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 117 - 329
Target Start/End: Complemental strand, 46598693 - 46598481
Alignment:
| Q |
117 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
216 |
Q |
| |
|
|||| ||||| ||||||| ||||| |||||| | ||||||||| || |||||||||||||| ||||| |||||||||||||| |||||||||| ||||| |
|
|
| T |
46598693 |
tgcggatccacggcatactccacacattaatcttagaaccatctccaatcttccatctatggcccaaagtaagtaaagattgagtactccataagctcct |
46598594 |
T |
|
| Q |
217 |
ccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcaccggtagtatttagctttgaggatccttgatagtaaagaggttgagtcg |
316 |
Q |
| |
|
||| ||||| ||||||||||| |||||| | |||||||| || |||| || || ||||||||||||||||||| || | | |||||||| |||||| |
|
|
| T |
46598593 |
ccaggtatagcttggattatgaccgagggttgcatccaagaagtcccgtctagggaagtatttagctttgaggattctggtgaataaagaggaggagtcg |
46598494 |
T |
|
| Q |
317 |
gataagagtttcc |
329 |
Q |
| |
|
||||||||||||| |
|
|
| T |
46598493 |
gataagagtttcc |
46598481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 117 - 329
Target Start/End: Complemental strand, 31801376 - 31801164
Alignment:
| Q |
117 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
216 |
Q |
| |
|
|||| ||||| ||||||| ||||| |||||| | ||||||||| || |||||||||||||| ||||| |||||||||||||| |||||||||| ||||| |
|
|
| T |
31801376 |
tgcggatccacggcatactccacacattaatcttagaaccatctccaatcttccatctatggcccaaagtaagtaaagattgagtactccataagctcct |
31801277 |
T |
|
| Q |
217 |
ccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcaccggtagtatttagctttgaggatccttgatagtaaagaggttgagtcg |
316 |
Q |
| |
|
||| ||||| ||||||||||| |||||| | |||||||| || ||| || || ||||||||||||||||||| || | | |||||||| |||||| |
|
|
| T |
31801276 |
ccaagtatagcttggattatgaccgagggtagcatccaagaagtccagtctagggaagtatttagctttgaggattctggtgaataaagaggaggagtcg |
31801177 |
T |
|
| Q |
317 |
gataagagtttcc |
329 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31801176 |
gataagagtttcc |
31801164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 117 - 329
Target Start/End: Complemental strand, 512746 - 512534
Alignment:
| Q |
117 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
216 |
Q |
| |
|
|||| ||||| || |||| ||||| |||||| | ||||||||| | ||||||||||||| ||||| |||||||||||||| |||||||||| ||||| |
|
|
| T |
512746 |
tgcggatccacggaatactccacacattaatcttagaaccatctacattcttccatctatggcccaaagtaagtaaagattgagtactccataagctcct |
512647 |
T |
|
| Q |
217 |
ccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcaccggtagtatttagctttgaggatccttgatagtaaagaggttgagtcg |
316 |
Q |
| |
|
|| ||||| ||||||||||| |||||| | |||||||| || |||| || || ||||||||||||||||||| || | | |||||||| |||||| |
|
|
| T |
512646 |
tcaggtatagcttggattatgaccgagggttgcatccaagaagtcccgtctagggaagtatttagctttgaggattctggtgaataaagaggaggagtcg |
512547 |
T |
|
| Q |
317 |
gataagagtttcc |
329 |
Q |
| |
|
||||||||||||| |
|
|
| T |
512546 |
gataagagtttcc |
512534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 18222722 - 18222824
Alignment:
| Q |
164 |
atcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggttggcatccaaaaaatccc |
263 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
18222722 |
atcttccatctatgccccaaggtaagtaatgattgaatactccaaagactcctccaagtatagcttggattatggccgagagaggcatccaagaaatccc |
18222821 |
T |
|
| Q |
264 |
ttc |
266 |
Q |
| |
|
||| |
|
|
| T |
18222822 |
ttc |
18222824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 266
Target Start/End: Complemental strand, 43968901 - 43968793
Alignment:
| Q |
158 |
tcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggttggcatccaaaa |
257 |
Q |
| |
|
||||| || |||||| ||| |||||| ||||| ||| ||| |||||||| |||||||| || ||| | ||||||||||| |||||| ||||||||| | |
|
|
| T |
43968901 |
tcaccaattttccatatataacccaaagtaagcaaatgttgagtactccaaagactccttcaagtaaagcttggattatgaccgagggaggcatccaaga |
43968802 |
T |
|
| Q |
258 |
aatcccttc |
266 |
Q |
| |
|
||||||||| |
|
|
| T |
43968801 |
aatcccttc |
43968793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 29843585 - 29843541
Alignment:
| Q |
36 |
acccgggttcaacaaataattaactgtaatatcctcatggtgcac |
80 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
29843585 |
acccggattcaacaaataattaacggtaacatcctcatggtgcac |
29843541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 117 - 329
Target Start/End: Complemental strand, 32498440 - 32498228
Alignment:
| Q |
117 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
216 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||| | ||||| || || || ||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32498440 |
tgcggatccaaggcatactccacacattaattagggaaccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcct |
32498341 |
T |
|
| Q |
217 |
ccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcaccggtagtatttagctttgaggatccttgatagtaaagaggttgagtcg |
316 |
Q |
| |
|
|||||| |||||||||||||| || || |||||||||||||||||||||| | | ||||||||||||||||| ||||| | || |||| |||||| |
|
|
| T |
32498340 |
ccatgtgtaacttggattatgacctagattggcatccaaaaaatcccttcggggaaaatatttagctttgaggattcttgaaaatagggaggacgagtcg |
32498241 |
T |
|
| Q |
317 |
gataagagtttcc |
329 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32498240 |
gataagagtttcc |
32498228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 234
Target Start/End: Original strand, 54422601 - 54422713
Alignment:
| Q |
122 |
atccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatg |
221 |
Q |
| |
|
||||||||||||| ||||| |||||||| || |||||||| |||||||||||||| ||||||||||| | |||||| | ||||||||||||||| || | |
|
|
| T |
54422601 |
atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggcactccatagactccttcaag |
54422700 |
T |
|
| Q |
222 |
tataacttggatt |
234 |
Q |
| |
|
| || |||||||| |
|
|
| T |
54422701 |
tgtagcttggatt |
54422713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 293
Target Start/End: Original strand, 23601337 - 23601442
Alignment:
| Q |
187 |
aagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcaccggtagtatttagctttg |
286 |
Q |
| |
|
|||||||||||| || ||| | | ||||| ||| ||||| ||||||||||||| |||||| ||||||| |||||||||| | || |||||||||||||| |
|
|
| T |
23601337 |
aagtaaagattgagtgctcaacaaactcc-ccaggtataggttggattatggccaaggttgacatccaagaaatcccttcgcgggaagtatttagctttg |
23601435 |
T |
|
| Q |
287 |
aggatcc |
293 |
Q |
| |
|
||||||| |
|
|
| T |
23601436 |
aggatcc |
23601442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 261
Target Start/End: Complemental strand, 33707597 - 33707464
Alignment:
| Q |
128 |
ggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataac |
227 |
Q |
| |
|
||||||| | ||| ||| |||| ||| |||||||| |||||||||| ||| || | | |||||||| || ||||| || ||||||||||| ||||||| |
|
|
| T |
33707597 |
ggcatactcaacacattgatttcagagccatcaccaatcttccatccatgccctatgataagtaaattttaggtacttcagagactcctccacgtataac |
33707498 |
T |
|
| Q |
228 |
ttggattatggccgaggttggcatccaaaaaatc |
261 |
Q |
| |
|
||||||| ||||| || |||||| |||| ||||| |
|
|
| T |
33707497 |
ttggattgtggccaagattggcacccaagaaatc |
33707464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 43732791 - 43732690
Alignment:
| Q |
136 |
ccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggatta |
235 |
Q |
| |
|
||||| |||||||| | ||||| ||| |||||||||||||||||||| |||| ||| ||| | |||||| ||||| ||||| || || ||||||||| |
|
|
| T |
43732791 |
ccacacattaattttggtaccattaccaatcttccatctatgacccaaagtaactaagtgttgggcactccaaagacttctccaagtgtagcttggatta |
43732692 |
T |
|
| Q |
236 |
tg |
237 |
Q |
| |
|
|| |
|
|
| T |
43732691 |
tg |
43732690 |
T |
|
Back To:
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Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 117 - 329
Target Start/End: Original strand, 2500401 - 2500612
Alignment:
| Q |
117 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
216 |
Q |
| |
|
|||| ||||||||||||| ||||| |||||||||||| || || || || ||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2500401 |
tgcggatccaaggcatactccacacattaatttgagagccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcct |
2500500 |
T |
|
| Q |
217 |
ccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcaccggtagtatttagctttgaggatccttgatagtaaagaggttgagtcg |
316 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||||| ||||||||||||| | | |||||||||||| |||| ||||| | || |||| |||||| |
|
|
| T |
2500501 |
ccatgtgtaacttggattatggcctagattggcatctaaaaaatcccttcggggaaaatatttagctttg-ggattcttgaaaatagggaggacgagtcg |
2500599 |
T |
|
| Q |
317 |
gataagagtttcc |
329 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2500600 |
gataagagtttcc |
2500612 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 152 - 284
Target Start/End: Original strand, 52966076 - 52966208
Alignment:
| Q |
152 |
gaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggttggcat |
251 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| || |||||||||||||| || ||||| |
|
|
| T |
52966076 |
gaaccatctccaatcttccatctatgacccaaggtaagtaaagattgagtgctccaaagactcctccatgtgtagcttggattatggccaagaggggcat |
52966175 |
T |
|
| Q |
252 |
ccaaaaaatcccttcaccggtagtatttagctt |
284 |
Q |
| |
|
|||| |||||||||| || |||||||||||| |
|
|
| T |
52966176 |
ccaagaaatcccttctagggaagtatttagctt |
52966208 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 146 - 263
Target Start/End: Original strand, 4755664 - 4755781
Alignment:
| Q |
146 |
atttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggt |
245 |
Q |
| |
|
|||| |||| ||||||| |||||||||||||| || | | |||||||| ||| |||||||| ||||||||||||||||| |||||||||| ||| |||| |
|
|
| T |
4755664 |
attttagaaacatcaccaatcttccatctatggcctatgataagtaaattttgggtactccaaagactcctccatgtatagcttggattatagccaaggt |
4755763 |
T |
|
| Q |
246 |
tggcatccaaaaaatccc |
263 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4755764 |
tggcatccaaaaaatccc |
4755781 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 119 - 288
Target Start/End: Complemental strand, 2332530 - 2332363
Alignment:
| Q |
119 |
cgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctcc |
218 |
Q |
| |
|
|||| ||||||||| ||||| |||||||| ||| |||||||| || |||||||||| | ||||||||||||| || |||||||| |||||||||| |
|
|
| T |
2332530 |
cgaagccaaggcattttccacacattaattttagagccatcaccaattttccatctataatacaaggtaagtaaatgtta-gtactccaaagactcctcc |
2332432 |
T |
|
| Q |
219 |
atgtataacttggattatggccgaggttggcatccaaaaaatcccttcaccggtagtatttagctttgag |
288 |
Q |
| |
|
| ||||| ||||||||||| ||||| | | ||||| |||||||||| ||| | ||||||| |||||||| |
|
|
| T |
2332431 |
aagtatagcttggattatgaccgagatggacatcc-aaaaatccctacacatgaagtatttggctttgag |
2332363 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 51141361 - 51141446
Alignment:
| Q |
152 |
gaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatg |
237 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| | | |||| |||||||| ||| | |||||||| |||||||||||||| |
|
|
| T |
51141361 |
gaaccatctccaatcttccatctatgacccaaggtaagcagatattgagtactccaaagaattctccatgtgtaacttggattatg |
51141446 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 263
Target Start/End: Complemental strand, 6864603 - 6864463
Alignment:
| Q |
122 |
atccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatg |
221 |
Q |
| |
|
||||| ||||||| ||||| ||| |||| |||||||||||| ||||||| |||| | || | |||||||||| ||| ||||||| || ||||| | |
|
|
| T |
6864603 |
atccatggcatactccacacattgattt-agaaccatcaccgatcttccttctaaggcctatggtaagtaaattttggatactccaatgatggctccacg |
6864505 |
T |
|
| Q |
222 |
tataacttggattatggccgaggttggcatccaaaaaatccc |
263 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
6864504 |
tatagcttggattgtggccaaggttggcatccaaaaaatccc |
6864463 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 234
Target Start/End: Original strand, 24596087 - 24596185
Alignment:
| Q |
136 |
ccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggatt |
234 |
Q |
| |
|
||||| |||||||| ||||||| | | |||||||||| | | |||| |||||||||||||| | |||||| |||||||||||||| || |||||||| |
|
|
| T |
24596087 |
ccacacattaattttcgaaccattaacaatcttccatcgaaggtccaaagtaagtaaagattgggcactccaaagactcctccatgtgtagcttggatt |
24596185 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 142 - 313
Target Start/End: Original strand, 189589 - 189760
Alignment:
| Q |
142 |
attaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccg |
241 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||||| |||||||| ||||||||||| |||||| | ||||||||||||||| ||||||||||||| || |
|
|
| T |
189589 |
attaatttgggaaccatcaccaatcatccatctatgtcccaaggtgagtaaagattgagtactcaaaagactcctccatgtaaaacttggattatgtcct |
189688 |
T |
|
| Q |
242 |
aggttggcatccaaaaaatcccttcaccggtagtatttagctttgaggatccttgatagtaaagaggttgag |
313 |
Q |
| |
|
|| ||||||| | ||||||||| | | || | |||||| |||||||||| |||||| || |||||||||| |
|
|
| T |
189689 |
agattggcatacgaaaaatcccattgcgggaaatatttaaatttgaggatctttgataatagagaggttgag |
189760 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 4243224 - 4243154
Alignment:
| Q |
167 |
ttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatg |
237 |
Q |
| |
|
||||||||||||||||| || || |||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4243224 |
ttccatctatgacccaaagtgagcaaagattgagtactccatagactcctccatgtatagcttggattatg |
4243154 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 647375 - 647302
Alignment:
| Q |
167 |
ttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggcc |
240 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| |||||||||||||||||||| || || ||||| || ||||| |
|
|
| T |
647375 |
ttccatctatatcccaatgtaagtaaagattgagtactccatagactcctccaagtgtagcttgggttgtggcc |
647302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 42703933 - 42704037
Alignment:
| Q |
136 |
ccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggatta |
235 |
Q |
| |
|
||||| |||||||| | ||||||||| |||||| || |||||||||| ||||| || ||| |||||||| ||||| ||||| ||| | ||||||||| |
|
|
| T |
42703933 |
ccacacattaattttggcaccatcaccaatcttcaatatatgacccaatgtaagcaagtgttgggtactccaaagacttctccaagtaaagcttggatta |
42704032 |
T |
|
| Q |
236 |
tggcc |
240 |
Q |
| |
|
||||| |
|
|
| T |
42704033 |
tggcc |
42704037 |
T |
|
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Target: scaffold0703 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 237
Target Start/End: Original strand, 861 - 981
Alignment:
| Q |
117 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
216 |
Q |
| |
|
|||||||||||||||| ||||| ||| || | ||||||| ||| ||||||||||||| ||||| |||||||| ||||| ||||||| |||||||| |
|
|
| T |
861 |
tgcgaatccaaggcattgaccacacatttatatttgaaccattaccaatcttccatctatagcccaacgtaagtaatgattggatactccaaagactcct |
960 |
T |
|
| Q |
217 |
ccatgtataacttggattatg |
237 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
961 |
ccatgtatagcttggattatg |
981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 263
Target Start/End: Original strand, 237912 - 238023
Alignment:
| Q |
152 |
gaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggttggcat |
251 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||||| || | |||||| | |||||||| |||||||| || | |||||||| ||||| | ||||||| |
|
|
| T |
237912 |
gaaccgtcaccaatcttccatctatagcccaaggttagaagagattgagaactccatatgctcctccaagtgaagcttggattgtggccaatattggcat |
238011 |
T |
|
| Q |
252 |
ccaaaaaatccc |
263 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
238012 |
ccaagaaatccc |
238023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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