View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11702_low_18 (Length: 284)
Name: NF11702_low_18
Description: NF11702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11702_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 29857446 - 29857188
Alignment:
| Q |
18 |
cgtagctcggtaagtactcgaaatgagtcaatttagtctctgaaataaacgtaactataaaaaataatttcttaaaaatctttgactacataagtttttt |
117 |
Q |
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| T |
29857446 |
cgtagctcggtaagtactcgaaatgagtcaatttagtctctgaaataaacgtaactataaaaaataatttcttaaaaatctttgactacataagtttttt |
29857347 |
T |
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| Q |
118 |
cgagttaatcaatttagtctctaaaattgctctgaaagaactaatgtggtcgaagatttttaagtttggcgaataatttgtgattttgtttatttcaagt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29857346 |
tgagttaatcaatttagtctctaaaattgctctgaaagaactaatgtggtcgaagatttttaagtttggcgaataatttgtgattttgtttatttcaagt |
29857247 |
T |
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| Q |
218 |
actaaatttgttgacannnnnnngttaagaaaaataatttgagtatgatgtattttatt |
276 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
29857246 |
actaaatttgtagacatttttttgttaagaaaaataatttgagtatgatgtattttatt |
29857188 |
T |
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