View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11702_low_22 (Length: 232)
Name: NF11702_low_22
Description: NF11702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11702_low_22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 53459818 - 53459591
Alignment:
| Q |
7 |
ttaacatgtatgtttcaagcttaaaggatcgaactaaacaaacttcgtaaaattatatcaacatttttcaagttttcatgtcatttt--gtatagggaca |
104 |
Q |
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| T |
53459818 |
ttaacatgtatgtttcaagcttataggatcgaactaaacaaacttcgtaaaattatatcgacatttttcaagttttcatgtcattttttgtatagggaca |
53459719 |
T |
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| Q |
105 |
ttgcctccaagtaaacccatgtttgaagctaaaaccgatgtgactaacagatttaaggagtgcatcaaccataaaatcgaagtccattttcctatagaaa |
204 |
Q |
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| T |
53459718 |
ttgcctccaagtaaacccatgtttgaagctaaaaccgatgtgactaacagatttaaggagtgcatcaaccataaaatcgaagtccattttcctatagaaa |
53459619 |
T |
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| Q |
205 |
aatacttttactctaaacgtactttgcc |
232 |
Q |
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|||||||||||||||||| ||||||||| |
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| T |
53459618 |
aatacttttactctaaacttactttgcc |
53459591 |
T |
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