View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11702_low_3 (Length: 511)
Name: NF11702_low_3
Description: NF11702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11702_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 495
Target Start/End: Original strand, 9336358 - 9336818
Alignment:
| Q |
19 |
atttggttaggatatatgcgatcatttattcaggaacattcnnnnnnnccttgaactgcaaagattaataatagatcatatcgaaaatgagagtgagtac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9336358 |
atttggttaggatatatgcgatcatttattcaggaacattctttttttccttgaactgcaaagattaataatagatcatatcgaaaatgagagtgagtac |
9336457 |
T |
|
| Q |
119 |
aagtaactcgttcatcaacattgttgtccagctggttttggtcttcactcttctgattaatgttcttgtggctgtatatatatgtggttgggactgtgtt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
9336458 |
aagtaactcgttcatcaacattgttgtccagctggttttggtcttcactcttctgattaatgttcttgtggctgtatatat--gtggttgggactgtctt |
9336555 |
T |
|
| Q |
219 |
ggctttctcttcatgtgatattccttgtcacagtctttccaccacagtctttttgagaaaatgacctaacagattcaaagttctaactccacccaaatca |
318 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9336556 |
ggctttctcttcgtgtgatattccttgtcaca--------------gtctttttgagaaaatgacctaccagattcaaagttctaactccacccaaatca |
9336641 |
T |
|
| Q |
319 |
ccgttaaaagcaaaaaccctacctaccaaaaactgagacattaaccgaattcaaggatgcgaagatccttaggatcggtgatggatttacagatagaagc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
9336642 |
ccgttaaaagcaaaaaccctacctaccaaaaactgaaacattaaccgaattcaaggatgcgagggtccttaggatcgatgatggatttacagatagaagc |
9336741 |
T |
|
| Q |
419 |
caaatcgatattcacttcacttcgcacctcccggttcgaatgaaaacgactatccttccattctgataacattattc |
495 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9336742 |
caaatcgatattcgcttcacttcgcacctcccagttcgaatgaaaaagactatccttccattctgataacattattc |
9336818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 430
Target Start/End: Original strand, 8209356 - 8209426
Alignment:
| Q |
360 |
taaccgaattcaaggatgcgaagatccttaggatcggtgatggatttacagatagaagccaaatcgatatt |
430 |
Q |
| |
|
|||||||||| | | |||||| |||| ||||||||||||||||| | | ||| |||||| ||||||||||| |
|
|
| T |
8209356 |
taaccgaattgacgaatgcgaggatcgttaggatcggtgatggagtgaaagagagaagctaaatcgatatt |
8209426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 360 - 445
Target Start/End: Original strand, 42365183 - 42365268
Alignment:
| Q |
360 |
taaccgaattcaaggatgcgaagatccttaggatcggtgatggatttacagatagaagccaaatcgatattcacttcacttcgcac |
445 |
Q |
| |
|
|||||||||||| |||||||| | || |||||||||||||| || | ||||| |||||||| ||| ||||| ||||| ||||||| |
|
|
| T |
42365183 |
taaccgaattcacggatgcgagggtctttaggatcggtgattgagtcacagagagaagccagatcaatattggcttcatttcgcac |
42365268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University