View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11702_low_5 (Length: 505)
Name: NF11702_low_5
Description: NF11702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11702_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 20 - 494
Target Start/End: Complemental strand, 4141829 - 4141355
Alignment:
| Q |
20 |
ggttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacattacatttgatatatttcaca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4141829 |
ggttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacgttacatttgatatatttcaca |
4141730 |
T |
|
| Q |
120 |
attatgcattgcattatatggttctttgtttggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaatg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4141729 |
attatgcattgcattatatggttctttgtttggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaatg |
4141630 |
T |
|
| Q |
220 |
tatgctcaaggatgcacaaattttatataatgtttgctacaaatcttgcatgtacagtatgaattgagataccgcgatggtcgcaatgggtatataaaga |
319 |
Q |
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| T |
4141629 |
tatgctcaaggatgcacaaatcttatataatgtttgctacaaatcttgcatgtacagtatgaattgagataccgcgatggtcacaatgggtatataaaga |
4141530 |
T |
|
| Q |
320 |
acgacaaagttataggagtgtagagcaaaatgaattacttatattgaactggttttctaccaacaaaggtagtatagtgtctctagagttaactagtgca |
419 |
Q |
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| T |
4141529 |
acgacaaagttataggagtgtagagcaaaatgaattacttatattgaactggttttctatcaacaaaggtagtatagtgtctctagagttaactagtgca |
4141430 |
T |
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| Q |
420 |
gatgaataacaagctcattgcatttcaaagaaatactacattttgaataacaatctcattcgcaacgatattctt |
494 |
Q |
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| T |
4141429 |
gatgaataacaagctcattgcatttcaaagaaatactacattttgaataacaatctcattcgcaacgatattctt |
4141355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 3754984 - 3755085
Alignment:
| Q |
24 |
ttgcatcttcagaaattgctgtcattttcatttatattatttctttgtta-caggtttttgttctctcgtcatacattacatttgatatatttcacaatt |
122 |
Q |
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||||| ||||||||| | |||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||||||| ||||||||| |
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| T |
3754984 |
ttgcagcttcagaaacttctgtcattttcatttatattatttgtttgttatttggttttttttctc---tcatacattacatttgatatagttcacaatt |
3755080 |
T |
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| Q |
123 |
atgca |
127 |
Q |
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|||| |
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| T |
3755081 |
ttgca |
3755085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 3755079 - 3755115
Alignment:
| Q |
210 |
ttttgcaatgtatgctcaaggatgcacaaattttata |
246 |
Q |
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|||||||||||||||||||||||||| |||||||||| |
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| T |
3755079 |
ttttgcaatgtatgctcaaggatgcagaaattttata |
3755115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 2677807 - 2677757
Alignment:
| Q |
217 |
atgtatgctcaaggatgcacaaattttatataatgtttgctacaaatcttgca |
269 |
Q |
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| T |
2677807 |
atgtatgcttaaggatgcacaaattt--tataatgtttacttcaaatcttgca |
2677757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 378
Target Start/End: Original strand, 3755121 - 3755157
Alignment:
| Q |
342 |
gagcaaaatgaattacttatattgaactggttttcta |
378 |
Q |
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|||| |||||||||||||||| ||||||||||||||| |
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| T |
3755121 |
gagccaaatgaattacttatactgaactggttttcta |
3755157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 11082198 - 11082412
Alignment:
| Q |
20 |
ggttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacattacatttgatatatttcaca |
119 |
Q |
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||||||| | ||||||||||| |||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
11082198 |
ggttttgtagcttcagaaatttctgtcattttcatttatattatttgtttgtcagaggtttttgttctctcatcatacattacatttgatatagttcaca |
11082297 |
T |
|
| Q |
120 |
attatgcattgcattatatggttctttgtttggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaatg |
219 |
Q |
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|||||||||| | ||||||| | ||| |||| ||||||||||||||| ||| ||||||||| ||| |||||| || |||||||||| || |
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| T |
11082298 |
attatgcattacgttatatgatacttcgttt-aatttctatgattctaa----------gatatttttcaaaggcattgtaattttcattttttgcattg |
11082386 |
T |
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| Q |
220 |
tatgctcaaggatgcacaaattttat |
245 |
Q |
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||||||||||| | ||||||| |||| |
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| T |
11082387 |
tatgctcaaggttacacaaatattat |
11082412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 1427351 - 1427278
Alignment:
| Q |
22 |
ttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcat |
95 |
Q |
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||||||| ||| ||||||||| | ||||||||||||||||| | ||||||| | |||||||||||||| |||| |
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| T |
1427351 |
ttttgcaacttgagaaattgccattattttcatttatattatatgtttgttagaagtttttgttctctcctcat |
1427278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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