View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11702_low_6 (Length: 475)
Name: NF11702_low_6
Description: NF11702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11702_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 43583541 - 43583085
Alignment:
| Q |
1 |
tggaggaggaggagagatatcagcgagggaatagcgaagaagatcggtgttggcagcgtcgagttccttttgaagcctttgaacttgtctttgtagaaaa |
100 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43583541 |
tggaggaggtggagagatatcagcgagggaatagcgaagaagatcggtgttagcagcgtcgagttccttttgaagcctttgaacttgtctttgtagaaaa |
43583442 |
T |
|
| Q |
101 |
gagatggctcctacacatccataaactggatccctaactcgtgcttcggcttcgtaagcaagggagttcacagcatcctccctttggtgagggaggagtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43583441 |
gagatggctcctacacatccataaactggatccctaactcgtgcttcggcttcataagcaagggagttcacagcatcctccctttggtgagggagaagtt |
43583342 |
T |
|
| Q |
201 |
cattgagaagctttgtgacattgctagcaccaaatattttgtgcacgtttgcaaatttttgaggctcttctggagggaagtaaggtgcaaagatgcatcc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43583341 |
cattgagaagctttgtgacattgctagcaccaaatattttgtgcacgtttgcaaatttttgaggctcttctggagggaagtaaggtgcaaagatgcatcc |
43583242 |
T |
|
| Q |
301 |
tggcatgcattttctcctcaagaatttgcaggcagcacaaggtgaattgtatgagctggatgatgatgccatttttatttatattaattctctgcacata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43583241 |
tggcatgcattttctcctcaagaatttgcaggcagcacaaggtgaattgtatgagctggatgatgatgccatttttatttatattaattctctgcacata |
43583142 |
T |
|
| Q |
401 |
attaagatattgagagacttcatcataggtgcattttgaactctttaacaatctaag |
457 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43583141 |
attaagatattgagagacttcatcatagatgcattttgaactctttaacaatctaag |
43583085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 32513111 - 32513188
Alignment:
| Q |
216 |
tgacattgctagcaccaaatattttgtgcacgtttgcaaatttttgaggctcttctggagggaagtaaggtgcaaaga |
293 |
Q |
| |
|
||||||||||||||||||| | |||||| || || |||||||| |||||||| || | |||||||||||| ||||||| |
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|
| T |
32513111 |
tgacattgctagcaccaaagactttgtgaacattagcaaatttgtgaggctcatcagcagggaagtaaggagcaaaga |
32513188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 33 - 376
Target Start/End: Complemental strand, 34675520 - 34675180
Alignment:
| Q |
33 |
agcgaagaagatcggtgttggcagcgtcgagttccttttgaagcctttgaacttgtctttgtagaaaagagatggctcctacacatccataaactggatc |
132 |
Q |
| |
|
||||||||||||||| || |||| || |||||||||||||| || ||||||||||| || || |||||||| || || ||||| |||||||| ||||| |
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| T |
34675520 |
agcgaagaagatcggcattagcagaatcaagttccttttgaagtctctgaacttgtctctgaaggaaagagatagcaccaacacaaccataaacaggatc |
34675421 |
T |
|
| Q |
133 |
cctaactcgtgcttcggcttcgtaagcaagggagttcacagcatcctccctttggtgagggaggagttcattgagaagctttgtgacattgctagcacca |
232 |
Q |
| |
|
|| || ||||| |||||||| ||||||||||| ||||| ||||| || || ||||||||||||||||| ||||| | ||||||||| ||||| || || |
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|
| T |
34675420 |
tctcacacgtgcctcggcttcataagcaagggaattcactgcatcttctctctggtgagggaggagttcgttgaggatctttgtgacgttgcttgcgccg |
34675321 |
T |
|
| Q |
233 |
aatattttgtgcacgtttgcaaatttttgaggctcttctggagggaagtaaggtgcaaagatgcatcctggcatgcattttctcctcaagaatttgcagg |
332 |
Q |
| |
|
|| || ||||| |||||||||||||||||||| ||||| || || ||||| |||||||||||||| |||||||||||||||| | | ||||||||||| |
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|
| T |
34675320 |
aagatcttgtgaacgtttgcaaatttttgaggttcttccggtggaaagtatggtgcaaagatgcagcctggcatgcattttcgacgaaggaatttgcagg |
34675221 |
T |
|
| Q |
333 |
cagcacaaggtgaattgtatgagctggatgatgatgccattttt |
376 |
Q |
| |
|
| ||||| ||||||||||||||||| |||||||||||||||| |
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| T |
34675220 |
ctgcacatggtgaattgtatgagct---tgatgatgccattttt |
34675180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 62 - 348
Target Start/End: Original strand, 12360614 - 12360900
Alignment:
| Q |
62 |
agttccttttgaagcctttgaacttgtctttgtagaaaagagatggctcctacacatccataaactggatccctaactcgtgcttcggcttcgtaagcaa |
161 |
Q |
| |
|
||||||||||| ||||| |||||||||||| || | || ||||| || || || |||||||||||||| | | | ||| || ||||| ||||||| |
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| T |
12360614 |
agttccttttggagcctaataacttgtctttggaggactgaaatggcaccgacgcaaccataaactggatcttttatccttgcctcagcttcataagcaa |
12360713 |
T |
|
| Q |
162 |
gggagttcacagcatcctccctttggtgagggaggagttcattgagaagctttgtgacattgctagcaccaaatattttgtgcacgtttgcaaatttttg |
261 |
Q |
| |
|
| |||||||| ||||| |||||||| || || | | |||||| ||||| || | |||||||| ||||||||||||||||| || |||||||||||||| |
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|
| T |
12360714 |
gagagttcactgcatcttccctttgatgtggttgcacttcattcagaagtttacttacattgcttgcaccaaatattttgtgaacatttgcaaatttttg |
12360813 |
T |
|
| Q |
262 |
aggctcttctggagggaagtaaggtgcaaagatgcatcctggcatgcattttctcctcaagaatttgcaggcagcacaaggtgaatt |
348 |
Q |
| |
|
|| |||||||| ||||| || || ||||| ||||| |||||||||| || || ||||| || ||||| |||||||| |||||||| |
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|
| T |
12360814 |
tggttcttctggtgggaaatatggagcaaatatgcaatctggcatgcacttccttctcaaaaacttgcaagcagcacatggtgaatt |
12360900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 59 - 297
Target Start/End: Complemental strand, 591411 - 591173
Alignment:
| Q |
59 |
tcgagttccttttgaagcctttgaacttgtctttgtagaaaagagatggctcctacacatccataaactggatccctaactcgtgcttcggcttcgtaag |
158 |
Q |
| |
|
|||||||||||||||||| | | | ||||||||| || | ||| || ||||| ||||| ||||| |||||||| ||| | |||||| ||||| |||| |
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|
| T |
591411 |
tcgagttccttttgaagcttaaggagttgtctttgaagcacagatatagctccaacacaaccatacactggatctttaatccttgcttcagcttcataag |
591312 |
T |
|
| Q |
159 |
caagggagttcacagcatcctccctttggtgagggaggagttcattgagaagctttgtgacattgctagcaccaaatattttgtgcacgtttgcaaattt |
258 |
Q |
| |
|
| || || ||||| | ||| || ||||| || || | | |||||| |||| || | ||||| || ||||||||||||||||| || |||||||| || |
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|
| T |
591311 |
ctagagaattcaccgtatcttctctttgatggggtaaaacttcatttagaattttgctaacattacttgcaccaaatattttgtgaacatttgcaaactt |
591212 |
T |
|
| Q |
259 |
ttgaggctcttctggagggaagtaaggtgcaaagatgca |
297 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
591211 |
atgaggctcttctggtgggaaataaggtgcaaaaatgca |
591173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 348
Target Start/End: Complemental strand, 600829 - 600699
Alignment:
| Q |
218 |
acattgctagcaccaaatattttgtgcacgtttgcaaatttttgaggctcttctggagggaagtaaggtgcaaagatgcatcctggcatgcattttctcc |
317 |
Q |
| |
|
|||||||| ||||||||||||||||| || || ||||||| |||||||||||||| ||||| ||||||||||| ||||| || | |||||||||| | |
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| T |
600829 |
acattgcttgcaccaaatattttgtgaacattgacaaatttatgaggctcttctggtgggaaataaggtgcaaaaatgcaatcttggttgcattttcttc |
600730 |
T |
|
| Q |
318 |
tcaagaatttgcaggcagcacaaggtgaatt |
348 |
Q |
| |
|
| | ||| ||||| |||||||| || ||||| |
|
|
| T |
600729 |
ttaggaacttgcaagcagcacatggagaatt |
600699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 291
Target Start/End: Complemental strand, 15262785 - 15262643
Alignment:
| Q |
149 |
gcttcgtaagcaagggagttcacagcatcctccctttggtgagggaggagttcattgagaagctttgtgacattgctagcaccaaatattttgtgcacgt |
248 |
Q |
| |
|
||||| |||||||| || ||||||||||| || | |||||||||| | | ||||||||||||||||| |||||||| || ||||| ||| | || || | |
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|
| T |
15262785 |
gcttcataagcaagtgaattcacagcatcttcacgttggtgagggtgtaaatcattgagaagctttgtaacattgcttgctccaaaaattctatgaacat |
15262686 |
T |
|
| Q |
249 |
ttgcaaatttttgaggctcttctggagggaagtaaggtgcaaa |
291 |
Q |
| |
|
||||||||||||| |||| || || || || ||||||||||| |
|
|
| T |
15262685 |
ttgcaaatttttgtggctgatcaggtggaaaataaggtgcaaa |
15262643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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