View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11702_low_7 (Length: 475)

Name: NF11702_low_7
Description: NF11702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11702_low_7
NF11702_low_7
[»] chr5 (5 HSPs)
chr5 (116-453)||(4175836-4176176)
chr5 (261-451)||(4171822-4172026)
chr5 (31-119)||(14591840-14591928)
chr5 (26-119)||(30917461-30917554)
chr5 (31-119)||(19828629-19828717)
[»] chr3 (2 HSPs)
chr3 (31-119)||(40396829-40396917)
chr3 (44-103)||(50232689-50232747)
[»] chr4 (3 HSPs)
chr4 (15-104)||(25871128-25871217)
chr4 (15-119)||(25506234-25506338)
chr4 (15-104)||(16748843-16748932)
[»] chr6 (1 HSPs)
chr6 (15-119)||(31121161-31121265)
[»] chr1 (1 HSPs)
chr1 (31-104)||(50052797-50052870)
[»] chr2 (1 HSPs)
chr2 (14-103)||(13007955-13008044)


Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 116 - 453
Target Start/End: Original strand, 4175836 - 4176176
Alignment:
Q  116 aattcctaagcaatgtagtgttttttggtgtaccggagcaaaaaccaataatgataaatgataaatatctaagataagagaccatcctatgcaatgcaca 215  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4175836 aattcctaagcaatgtagagttttttggtgtaccgtagcaaaaaccaataatgataaatgataaatatctaagataagagaccatcctatgcaatgcaca 4175935  T
Q  216 ccacatatattattgaccatatataattatatacctttcgtcctttt---tgaaatttaaagcacgtagttcttttccatcctcagatttcagcactatc 312  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4175936 caacatatattattgaccatatataattatataccttccgtccttttctttgaaatttaaagcacgtagttcttttccatcctcagatttcagcactatc 4176035  T
Q  313 ctgtacagccgaatttatgaactgatataagaattgtgcaacaaggcaagggataaaaataaaaaggtaacgaattaaattacccttgaatttctaaata 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4176036 ctgtacagccgaatttatgaactgatataagaattgtgcaacaaggcaagggataaaaataaaaaggtaacgaattaaattacccttgaatttctaaata 4176135  T
Q  413 ttgagttctgagataatttgctactccaattgaatcaagag 453  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4176136 ttgagttctgagataatttgctactccaattgaatcaagag 4176176  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 261 - 451
Target Start/End: Original strand, 4171822 - 4172026
Alignment:
Q  261 tttgaaatttaaagcacgtagttcttttccatcctcagatttcagcactatcctgtacagccgaatttatgaac---------------tgatataagaa 345  Q
    ||||||||| || |||||||||||| ||||||||||||| |||| ||| |||||||||||| ||  ||||||||               | ||||| | |    
T  4171822 tttgaaattgaaggcacgtagttctcttccatcctcagacttcaccaccatcctgtacagctgatattatgaaccagctcaagctcagctaatatatgca 4171921  T
Q  346 ttgtgcaacaaggcaagggataaaaataaaaaggtaacgaattaaattacccttgaatttctaaatattgagttctgagataatttgctactccaattga 445  Q
    ||||||||| ||||||| ||||||||| ||||  |||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  4171922 ttgtgcaaccaggcaagtgataaaaattaaaac-taacaaattaagttacccttgaatttctaaatattgagttctgaggtaatttgctactccaatgga 4172020  T
Q  446 atcaag 451  Q
    ||||||    
T  4172021 atcaag 4172026  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 14591928 - 14591840
Alignment:
Q  31 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 119  Q
    |||||||||||| |||||||||| ||| || ||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||    
T  14591928 aaaatgaatgaagggctaagatttattcagatgtcattaaaaggaatggatggctaagattatttcacaggagaaaacaggaggaaatt 14591840  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 30917461 - 30917554
Alignment:
Q  26 acattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 119  Q
    ||||||||||||||||| || |||||||||||||| ||| |||||||| |||||| ||||| |||||||||||| |||| || ||||| |||||    
T  30917461 acattaaaatgaatgaagggttaagattaattaagatgtcattaaaagaaatggacggctaagattatttcactcgagaaaataggagaaaatt 30917554  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 19828717 - 19828629
Alignment:
Q  31 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 119  Q
    |||||||||||| |||||| |||| ||||| ||||||||||| | ||||| ||||| ||||||||||| ||||| |||| |||||||||    
T  19828717 aaaatgaatgaagggctaaaattagttaagatgttattaaaatggatggacggctaagattatttcacaggagaaaacatgaggaaatt 19828629  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 40396829 - 40396917
Alignment:
Q  31 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 119  Q
    |||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||    
T  40396829 aaaatgaatgaaggactaagattaattaagatgtcattaaaaggaatggatggctaagattatttcacaggagaaaacaggagaaaatt 40396917  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 50232689 - 50232747
Alignment:
Q  44 ggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggag 103  Q
    ||||||||||||||||| ||| ||||||| |||||||||| || ||||||||||| ||||    
T  50232689 ggctaagattaattaagatgtcattaaaa-gaatggatggttaagattatttcacaggag 50232747  T

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Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 25871217 - 25871128
Alignment:
Q  15 atgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggaga 104  Q
    ||||||| |||||||| |||||||||||||||| |||||| ||||||||| ||||||||||||||| || || ||||||||||| |||||    
T  25871217 atgaaaatgacacattgaaatgaatgaaaggctgagattagttaaggtgtcattaaaaggaatggacggttaagattatttcacaggaga 25871128  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 25506338 - 25506234
Alignment:
Q  15 atgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggagg 114  Q
    ||||||| |||||||||||||||||||| |||| |||||||||||||| | |||||||| |||||| ||||| ||||  ||||| ||||| ||| |||||    
T  25506338 atgaaaatgacacattaaaatgaatgaagggctgagattaattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaactggagg 25506239  T
Q  115 aaatt 119  Q
    |||||    
T  25506238 aaatt 25506234  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 16748932 - 16748843
Alignment:
Q  15 atgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggaga 104  Q
    ||||||| |||||||| ||||||||||||| || |||||| ||||||||| ||||||| ||||||| | ||| ||||||||||| |||||    
T  16748932 atgaaaatgacacattgaaatgaatgaaagactgagattagttaaggtgtcattaaaaagaatggacgactaagattatttcacaggaga 16748843  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 31121161 - 31121265
Alignment:
Q  15 atgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggagg 114  Q
    ||||||| |||||||||||||||||||| |||| |||||||||||||| | |||||||| |||||| ||||| ||||  ||||| ||||| ||| |||||    
T  31121161 atgaaaatgacacattaaaatgaatgaagggctgagattaattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaactggagg 31121260  T
Q  115 aaatt 119  Q
    |||||    
T  31121261 aaatt 31121265  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 50052870 - 50052797
Alignment:
Q  31 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggaga 104  Q
    |||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||  ||||||||||| |||||    
T  50052870 aaaatgaatgaaggactaagattaattaagatgtcattaaaaggaatggatggctgagattatttcacaggaga 50052797  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 13007955 - 13008044
Alignment:
Q  14 gatgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggag 103  Q
    ||||| || ||||| |||||||||||||| ||||||||| | ||||||||| |||||||||||||||  || |  |||||||||||||||    
T  13007955 gatgacaatgacacgttaaaatgaatgaagggctaagatcagttaaggtgtcattaaaaggaatggacagccaaaattatttcactggag 13008044  T

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