View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11702_low_8 (Length: 446)
Name: NF11702_low_8
Description: NF11702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11702_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 17 - 436
Target Start/End: Original strand, 44579962 - 44580381
Alignment:
| Q |
17 |
cagcttggagggataatatctcccagcattggtaaactaagtagacttcagagattgtaagtagaaaatgtttcacaaatcattgatgcatttacttctt |
116 |
Q |
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| T |
44579962 |
cagcttggagggataatatctcccagcattggtaaactaagtagacttcagagattgtaagtagaaaatgtttcacaaatcattgatgcatttacttctt |
44580061 |
T |
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| Q |
117 |
tggatttttgtaattcttattcttttcagtggcttaatgattcagggcatttcatcagaatggcttgcatggaatcattcctactgaaattaccaattgt |
216 |
Q |
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| T |
44580062 |
tggatttttgtaattcttattcttttcagtggcttaatgattcagggcatttcatcagaatggcttgcatggaatcattcctactgaaattaccaattgt |
44580161 |
T |
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| Q |
217 |
actgagcttagagccctgtaagtaaaattcttcatttccttgctagaaattttcaatgtccattatattttcctaatacctcaatgaatgattcctttga |
316 |
Q |
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| T |
44580162 |
actgagcttagagccctgtaagtaaaattcttcatttccttgctagaaattttcaatgtccattatattttcctaatatctcaatgaatgattcctttga |
44580261 |
T |
|
| Q |
317 |
ctctattgaaaaggtacttgagggctaattattttcaaggaggcataccatcaggcattggaaatctttcatttttaaatatactgtaagtccgtttctc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44580262 |
ctctattgaaaaggtacttgagggctaattattttcaaggaggcataccatcaggcattggaaatctttcatttttaaatatactgtaagtctgtttctc |
44580361 |
T |
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| Q |
417 |
gttttatttcggttcctttg |
436 |
Q |
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| T |
44580362 |
gttttatttcggttcctttg |
44580381 |
T |
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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 397
Target Start/End: Original strand, 40173312 - 40173407
Alignment:
| Q |
301 |
tgaatgattcctttgactctattgaaaaggtacttgagggctaattattttcaaggaggcataccatcaggcattggaaatctttcatttttaaata |
397 |
Q |
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|||||| ||| || |||| |||||||| || | ||||||||||||||||| |||||||||||| ||||||| |||||||| ||| |||||||||||| |
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| T |
40173312 |
tgaatgtttcattagactttattgaaa-ggcaattgagggctaattatttccaaggaggcatatcatcaggtattggaaaccttccatttttaaata |
40173407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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