View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11702_low_9 (Length: 414)
Name: NF11702_low_9
Description: NF11702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11702_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 100 - 398
Target Start/End: Original strand, 25013090 - 25013390
Alignment:
| Q |
100 |
tgtggtatatgcttaacaaactctaatatgttttcaaccggtttatgcaatcatcccttttgtactatatgcatatccaagtatgcaaagattcaaataa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25013090 |
tgtggtatatgcttaacaaactctaatatgttttcaaccggtttatgcaatcatcccttttgtactataagcatatccaagtatgcaaagattcaaataa |
25013189 |
T |
|
| Q |
200 |
aagaaaaagttgtgaaagtgaagtgcccagatccagaatgttcagttgaactcaaacaagaacatttgctatccattttacctaacgaaatcattcttga |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
25013190 |
aagaaaaagttgtgaaagtgaagtgcccagatccagaatgttcagttgaactcaaacaagaacatttgcaatccattttacctaacgaaatcattgttga |
25013289 |
T |
|
| Q |
300 |
ttgggaatctgcaaactgcgaggcttccattgctttgaagg--aaannnnnnngtccttataagaattgttctcttttattggtgaatgacgaagcaggt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25013290 |
ttgggaatctgcaaactgcgaggcttccattgctttgaaggaaaaaatttactgtccttataagaattgttctcttttattggtgaatgacgaagcaggt |
25013389 |
T |
|
| Q |
398 |
g |
398 |
Q |
| |
|
| |
|
|
| T |
25013390 |
g |
25013390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 113 - 396
Target Start/End: Original strand, 25014221 - 25014506
Alignment:
| Q |
113 |
taacaaactctaatatgttttcaaccggtttatgcaatcatcccttttgtactatatgcatatccaagtatgcaaagattcaaataaaagaaaaagttgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||| || |
|
|
| T |
25014221 |
taacaaactctaatatgttttcaaccggtttatgcaatcatcccttttgtactaagtgcatatccaagtatgtgaagattgaaataaaagaaaaagtggt |
25014320 |
T |
|
| Q |
213 |
gaaagtgaagtgcccagatccagaatgttcagttgaactcaaacaagaacatttgctatccattttacctaacgaaatcattcttgattgggaatctgca |
312 |
Q |
| |
|
||| | ||||| || |||||||||||||| ||||||||||||| ||||||||||| || |||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
25014321 |
taaaatcaagtgtccggatccagaatgttctgttgaactcaaaccagaacatttgcaatgcattttacctaaaaaaatcattgttgattgggaatctgca |
25014420 |
T |
|
| Q |
313 |
aactgcgaggcttccattgctttgaagg--aaannnnnnngtccttataagaattgttctcttttattggtgaatgacgaagcagg |
396 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25014421 |
aactgcgaggcttccattgctttgaaggaaaaattttactgtccttacaagaattgttctcttttattggtgaatgacgaagcagg |
25014506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 113 - 396
Target Start/End: Original strand, 24990684 - 24990969
Alignment:
| Q |
113 |
taacaaactctaatatgttttcaaccggtttatgcaatcatcccttttgtactatatgcatatccaagtatgcaaagattcaaataaaagaaaaagttgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||| || |
|
|
| T |
24990684 |
taacaaactctaatatgttttcaaccggtttatgcaatcatcccttttgtactaagtgcatatccaagtatgtgaagatttaaataaaagaaaaagtggt |
24990783 |
T |
|
| Q |
213 |
gaaagtgaagtgcccagatccagaatgttcagttgaactcaaacaagaacatttgctatccattttacctaacgaaatcattcttgattgggaatctgca |
312 |
Q |
| |
|
||| | ||||| || |||||||||||||| ||||||||||||| ||||||||||| || |||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
24990784 |
taaaatcaagtgtccggatccagaatgttctgttgaactcaaaccagaacatttgcaatgcattttacctaaaaaaatcattgttgattgggaatctgca |
24990883 |
T |
|
| Q |
313 |
aactgcgaggcttccattgctttgaagg--aaannnnnnngtccttataagaattgttctcttttattggtgaatgacgaagcagg |
396 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24990884 |
aactgcgaggcttccattgctttgaaggaaaaattttactgtccttacaagaattgttctcttttattggtgaatgatgaagcagg |
24990969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 134 - 313
Target Start/End: Complemental strand, 24972126 - 24971946
Alignment:
| Q |
134 |
caaccggtttatgcaatcatcccttttgtactatatgcatatccaagtatgcaaagattcaaataaaagaaaaagttgtgaaagtgaagtgcccagatcc |
233 |
Q |
| |
|
|||| |||| ||||||||| ||||||||||||| |||||||||||| |||| || |||||| |||||||||| | |||||||||||||| || ||||| |
|
|
| T |
24972126 |
caactggttcatgcaatcaccccttttgtactaagtgcatatccaagaatgcgaaagttcaaagaaaagaaaaaatggtgaaagtgaagtgtccggatcc |
24972027 |
T |
|
| Q |
234 |
agaatgttcagttgaactcaaacaagaacatttgctatccattttacctaacgaaa-tcattcttgattgggaatctgcaa |
313 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||| | ||||||||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
24972026 |
agaatgttctgttgaactgaaaccagaacatttgcaacccattttacctaaaaaaagtcattgttgattgggaatctgcaa |
24971946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 25012975 - 25013050
Alignment:
| Q |
17 |
gaaggagaataagcatgcaactactaggaccaacaaacagatacagatcaagccaaaagaaaacaaaaacaacaca |
92 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25012975 |
gaaggagaataagcaagcaactactaggaccaacaaacagatacagatcaagccaaaagaaaacaaaaacaacaca |
25013050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 313
Target Start/End: Original strand, 25027092 - 25027261
Alignment:
| Q |
144 |
atgcaatcatcccttttgtactatatgcatatccaagtatgcaaagattcaaataaaagaaaaagttgtgaaagtgaagtgcccagatccagaatgttca |
243 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||| | |||| | ||||||||| || |||||| | || || ||| ||||||| ||||| |
|
|
| T |
25027092 |
atgcaatcatcccttttgtactaattgcatatccatgtatgtggatgttcagagaaaagaaaacgtggtgaaactaaattgtccaaatccagattgttct |
25027191 |
T |
|
| Q |
244 |
gttgaactcaaacaagaacatttgctatccattttacctaacgaaatcattcttgattgggaatctgcaa |
313 |
Q |
| |
|
|| ||||| |||| ||||||| || ||||||| ||||||| || ||||| |||| ||||||||||||| |
|
|
| T |
25027192 |
gtggaactgaaaccagaacatgtggaatccattatacctaaacaagtcattgttgaatgggaatctgcaa |
25027261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 25017829 - 25017865
Alignment:
| Q |
353 |
ccttataagaattgttctcttttattggtgaatgacg |
389 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
25017829 |
ccttataagaattgttctcttctgttggtgaatgacg |
25017865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 113 - 389
Target Start/End: Complemental strand, 33532676 - 33532397
Alignment:
| Q |
113 |
taacaaactctaatatgttttcaaccggtttatgcaatcatcccttttgtactatatgcatatccaagtatgcaaagattcaaataaaagaaaaagttgt |
212 |
Q |
| |
|
||||| ||||||| ||||||||||| || | ||||||||||||||||||||| |||||||| |||||||| |||| |||||||| ||||||||| || |
|
|
| T |
33532676 |
taacagactctaacatgttttcaactggct---gcaatcatcccttttgtactaaatgcatatgcaagtatgtgaagaatcaaataacagaaaaagtggt |
33532580 |
T |
|
| Q |
213 |
gaaagtgaagtgcccagatccagaatgttc----agttgaactcaaacaagaacatttgctatccattttacctaacgaaatcattcttgattgggaatc |
308 |
Q |
| |
|
|||| |||| || || |||||||||||||| |||||||| |||| ||||||||||| || |||||||||||| |||||||| ||||||||||||| |
|
|
| T |
33532579 |
gaaactgaattgtcctgatccagaatgttccgtacgttgaactgaaaccagaacatttgcaatacattttacctaaaaaaatcattgttgattgggaatc |
33532480 |
T |
|
| Q |
309 |
tgcaaactgcgaggcttccattgctttgaagg--aaannnnnnngtccttataagaattgttctcttttattggtgaatgacg |
389 |
Q |
| |
|
||||||||| ||| ||| ||| ||||||||| ||| |||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
33532479 |
tgcaaactgtgagaattctatttctttgaaggacaaaatttactgtccttataacaattgttctcttttgatggtgaatgacg |
33532397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 33532841 - 33532772
Alignment:
| Q |
19 |
aggagaataagcatgcaactactaggaccaacaaacagatacagatcaagccaaaagaaaacaaaaacaa |
88 |
Q |
| |
|
||||||||||| | ||||| ||| ||| |||||||||| |||||||||||||| || ||||| |||||| |
|
|
| T |
33532841 |
aggagaataagaaagcaaccactgggaacaacaaacaggtacagatcaagccagaaagaaacagaaacaa |
33532772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 26104043 - 26104083
Alignment:
| Q |
144 |
atgcaatcatcccttttgtactatatgcatatccaagtatg |
184 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
26104043 |
atgcaatcatccattttgtactaattgcatatccaagtatg |
26104083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 113 - 389
Target Start/End: Original strand, 16868671 - 16868950
Alignment:
| Q |
113 |
taacaaactctaatatgttttcaaccggtttatgcaatcatcccttttgtactatatgcatatccaagtatgcaaagattcaaataaaagaaaaagttgt |
212 |
Q |
| |
|
||||| ||||||| ||||||||||| || | ||||||||||||||||||||| |||||||| |||||||| |||| |||||||| ||||||||| || |
|
|
| T |
16868671 |
taacagactctaacatgttttcaactggct---gcaatcatcccttttgtactaaatgcatatgcaagtatgtgaagaatcaaataacagaaaaagtggt |
16868767 |
T |
|
| Q |
213 |
gaaagtgaagtgcccagatccagaatgttc----agttgaactcaaacaagaacatttgctatccattttacctaacgaaatcattcttgattgggaatc |
308 |
Q |
| |
|
|||| |||| || || |||||||||||||| |||||||| |||| ||||||||||| || |||||||||||| |||||||| ||||||||||||| |
|
|
| T |
16868768 |
gaaactgaattgtcctgatccagaatgttccgtacgttgaactgaaaccagaacatttgcaatacattttacctaaaaaaatcattgttgattgggaatc |
16868867 |
T |
|
| Q |
309 |
tgcaaactgcgaggcttccattgctttgaagg--aaannnnnnngtccttataagaattgttctcttttattggtgaatgacg |
389 |
Q |
| |
|
||||||||| ||| ||| ||| ||||||||| ||| |||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
16868868 |
tgcaaactgtgagaattctatttctttgaaggacaaaatttactgtccttataacaattgttctcttttgatggtgaatgacg |
16868950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 16868506 - 16868575
Alignment:
| Q |
19 |
aggagaataagcatgcaactactaggaccaacaaacagatacagatcaagccaaaagaaaacaaaaacaa |
88 |
Q |
| |
|
||||||||||| | ||||| ||| ||| |||||||||| |||||||||||||| || ||||| |||||| |
|
|
| T |
16868506 |
aggagaataagaaagcaaccactgggaacaacaaacaggtacagatcaagccagaaagaaacagaaacaa |
16868575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University