View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_high_10 (Length: 638)
Name: NF11703_high_10
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 1 - 621
Target Start/End: Complemental strand, 45191348 - 45190728
Alignment:
| Q |
1 |
tgagatgaatcttcacctgtttgataatgtaaattgtcacaattacctgtatggagataatgcaaaccacgagcagcgccaatgcatatttcaagcctct |
100 |
Q |
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| T |
45191348 |
tgagatgaatcttcatctgtttgataatgtaaattgtaacaattacctgtatggagataatgcaaaccacgagcagcgccaatgcatatttcaagcctct |
45191249 |
T |
|
| Q |
101 |
tttgccatgacaaaggagaaaagttggagttataaaggtgcgagcgaaaagggccattagacatgtaatcgtatacaagaaccatctctgagttttcatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45191248 |
tttgccatgacaaaggagaaaagttggagttataaaggtgcgagcgaaaagggccattagacatgtaatcgtatacaagaaccatctctgagttttcatc |
45191149 |
T |
|
| Q |
201 |
acagaaacctattagtgaaactaggtggcgatgtcgcagcttagaaagcatgtttagttcggttctgaactcatttattccttgctcagaaccaccacct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45191148 |
acagaaacctattagtgaaactaggtggcgatgtcgcagcttagaaagcatctttagttcggttctgaactcatttattccttgctcagaaccaccacct |
45191049 |
T |
|
| Q |
301 |
cctctttttacagcaacatttgttccatcatccaatgtcccaaggtacactttaccaaatcctccataaccaatcactctcttttcatcaaaattatctg |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45191048 |
cctctttttacagcaacatttgttccatcatccaatgtcccaaggtacactttaccaaatcctccataaccaatcactctcttttcatcaaaattatctg |
45190949 |
T |
|
| Q |
401 |
tagctcgttgcaattcgatgaaatgaaagaaccttcctgtccctcttggagagtgatgaacatcatgaccaccatgcttattcttaggtgaatcaaatgc |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45190948 |
tagctcgttgcaattcgatgaaatgaaagaaccttcctgtccctcttggagagtgatgaacatcatgaccaccatgcttattcttaggtgaatcaaatgc |
45190849 |
T |
|
| Q |
501 |
atttgcgtttgcactgcaacnnnnnnnagattttggacaaagaggtaagagccatgaagagaaacctctactttctttccaatctaaaggtctttttaac |
600 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45190848 |
atttgcgtttgcactgcaactttttttagattttggacaaagaggtaagagccatgaagagaaacctctactttctttccaatctaaaggtctttttaac |
45190749 |
T |
|
| Q |
601 |
cacctaatatacatcactact |
621 |
Q |
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||||||||||||||||||||| |
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| T |
45190748 |
cacctaatatacatcactact |
45190728 |
T |
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