View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_high_100 (Length: 237)
Name: NF11703_high_100
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_100 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3388996 - 3388774
Alignment:
| Q |
1 |
cccttgtatgtgttttgtaatatttttctgggagggaggattgacaatgcttgggcattaatgtgatcgattgcaggatcctattttcttctctcatgtg |
100 |
Q |
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| T |
3388996 |
cccttgtatgtgttttgtaatatttttctgggagggaggattgacaatgcttgggcattaatgtgatcgattgcaggatcctattttcttctctcatgtg |
3388897 |
T |
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| Q |
101 |
gtctttgatgtcatccacaatgaatcccatgtcaaggatttgctcgttttggagcatgtcatcattgtatctaccaatacttggcagcctccaaaagctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3388896 |
gtctttgatgtcatccacaatgaatcccatgtcaaggatttgctcgttttggagcatgtcatcattgtatctaccaatacttggcagcctccaaaagctt |
3388797 |
T |
|
| Q |
201 |
caaagtttttgtgtgtaatgtgt |
223 |
Q |
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| T |
3388796 |
caaagtttttgtgtgtaatgtgt |
3388774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 165
Target Start/End: Original strand, 3320082 - 3320239
Alignment:
| Q |
9 |
tgtgttttgtaatatttttctgggagggaggattgacaatgcttgggcattaatgtgatcgattgcaggatcct-attttcttctctcatgtggtctttg |
107 |
Q |
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||||||| |||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||| ||||||| | |
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| T |
3320082 |
tgtgtttagtaataattttcagggagggaggattgacaatgcttgggaattaatgtgattgattgtaggatcctgattttcttctctcccatggtcttgg |
3320181 |
T |
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| Q |
108 |
atgtcatccacaatgaatcccatgtcaaggatttgctcgttttggagcatgtcatcat |
165 |
Q |
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| T |
3320182 |
gtgtcatccaaaatgaatcccatgtcatggattagctcattttggagcatgttatcat |
3320239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 31178105 - 31178170
Alignment:
| Q |
2 |
ccttgtatgtgttttgtaatatttttctgggagggaggattgacaatgcttgggcattaatgtgat |
67 |
Q |
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| T |
31178105 |
ccttgtatgtgttttgtaatatttttcagggagggaggattgacaatgcttgggtattaatgtgat |
31178170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 31178617 - 31178682
Alignment:
| Q |
2 |
ccttgtatgtgttttgtaatatttttctgggagggaggattgacaatgcttgggcattaatgtgat |
67 |
Q |
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| T |
31178617 |
ccttgtatgtgttttgtaatatttttcagggagggaggattgacaatgcttgggtattaatgtgat |
31178682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 31179129 - 31179194
Alignment:
| Q |
2 |
ccttgtatgtgttttgtaatatttttctgggagggaggattgacaatgcttgggcattaatgtgat |
67 |
Q |
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| T |
31179129 |
ccttgtatgtgttttgtaatatttttcagggagggaggattgacaatgcttgggtattaatgtgat |
31179194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 3327083 - 3327032
Alignment:
| Q |
83 |
attttcttctctcatgtggtctttgatgtcatccacaatgaatcccatgtca |
134 |
Q |
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| T |
3327083 |
attttcttctctcctatggtcttggaagtcatccacaatgaatccaatgtca |
3327032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14765446 - 14765395
Alignment:
| Q |
1 |
cccttgtatgtgttttgtaatatttttctgggagggaggattgacaatgctt |
52 |
Q |
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| T |
14765446 |
cccttgtatggtttttgtaatatttttctggaagggaggacggacaatgctt |
14765395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 13938580 - 13938629
Alignment:
| Q |
33 |
agggaggattgacaatgcttgggcattaatgtgatcgattgcaggatcct |
82 |
Q |
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| T |
13938580 |
agggaggatgaacaatgcctgggcattaatttgattgattgcaggatcct |
13938629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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