View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_high_102 (Length: 234)
Name: NF11703_high_102
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_102 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 34229907 - 34229683
Alignment:
| Q |
1 |
tagtctaagaaacggccaccattgtcagggtagagcaatcatatttgtttgttgtctaacgaacttcacctcaaagttagaatgcaa----agcctatta |
96 |
Q |
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| T |
34229907 |
tagtctaagacacggccaccattgtcagggtagagcaatcatatttgtttgttgtctaacgaacttcacctcaaagttagaatgcaaagacagcctatta |
34229808 |
T |
|
| Q |
97 |
ataataatactatagataattgaactaaactttgaatcaccttgtgaagtgtgaactagaatt--aatagtttagtactgcttgtgagtcgcgttcaaac |
194 |
Q |
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| T |
34229807 |
ataataatactatagataattgaaataaactttgaatcacct-------tgtgaactagaattaaaagagtttagtactacttgtgagtcgcgttcaaac |
34229715 |
T |
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| Q |
195 |
actactctctcgagccccttgttgatgtccat |
226 |
Q |
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| T |
34229714 |
actactctctcgagccccttgttgatggccat |
34229683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 34237928 - 34237707
Alignment:
| Q |
1 |
tagtctaagaaacggccaccattgtcagggtagagcaatcatatttgtttgttgtctaacgaacttcacctcaaagttagaatgcaaag-cctattaata |
99 |
Q |
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| T |
34237928 |
tagtctaaaaaagggccgccattgtcaaggtagagcaatcatctttgtttgttgtctaacaaacttcacctcaaagttagaatgcaaagacagactatta |
34237829 |
T |
|
| Q |
100 |
ataatactatagataattgaactaaactttgaatcaccttgtgaagtgtgaactagaattaat--agtttagtactgcttgtgagtcgcgttcaaacact |
197 |
Q |
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| T |
34237828 |
ataatactatagataattgaactaaacattgaatcacct-------tgtgaactagaattaatagagtttagtactacttgtgagtcgcgttcaaacact |
34237736 |
T |
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| Q |
198 |
actctctcgagccccttgttgatgtccat |
226 |
Q |
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| T |
34237735 |
actctctcgagccctttgttgatggccat |
34237707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 24538742 - 24538686
Alignment:
| Q |
33 |
gagcaatcatatttgtttgttgtctaacgaacttcacctcaaagttagaatgcaaag |
89 |
Q |
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| T |
24538742 |
gagcaatcatgttcgcttgtttcctaacgaacttcacctcaaagttagaatgtaaag |
24538686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 1043606 - 1043659
Alignment:
| Q |
35 |
gcaatcatatttgtttgttgtctaacgaacttcacctcaaagttagaatgcaaa |
88 |
Q |
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| T |
1043606 |
gcaatcatatttgtttgtcgtctaacaaacgtaacctcaaaattggaatgcaaa |
1043659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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