View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_high_107 (Length: 227)
Name: NF11703_high_107
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_107 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 54 - 214
Target Start/End: Original strand, 44141519 - 44141679
Alignment:
| Q |
54 |
attctggttcttattcgcagaaccaatatcatcaggcttgtatagcgagaaccgtacaacatcattttgggtcttcagttcaactgactcattacttgtg |
153 |
Q |
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| T |
44141519 |
attctggttcttattcgcagaaccaatatcatcaggcttgtatagcgagaaccgtacaacatcattttgggtcttcagttcaactgactcattacttgtg |
44141618 |
T |
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| Q |
154 |
tatctggaaggtagccagtttccctgattaccatggcttcgaatgatatttgatctctgct |
214 |
Q |
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| T |
44141619 |
tatctggaaggtagccagtttccctgattaccatggcttcgaatgatatttgatctctgct |
44141679 |
T |
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Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 54 - 214
Target Start/End: Original strand, 50062096 - 50062256
Alignment:
| Q |
54 |
attctggttcttattcgcagaaccaatatcatcaggcttgtatagcgagaaccgtacaacatcattttgggtcttcagttcaactgactcattacttgtg |
153 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50062096 |
attctggttcttattcgcagaaccaatatcatcaggcttgtatagcgagaaccgtacaacatcattttgggtcttcagttcaactgactcattacttgtg |
50062195 |
T |
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| Q |
154 |
tatctggaaggtagccagtttccctgattaccatggcttcgaatgatatttgatctctgct |
214 |
Q |
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| T |
50062196 |
tatctggaaggtagccagtttccctgattaccatggcttcgaatgatatttgatctctgct |
50062256 |
T |
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