View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_high_108 (Length: 226)
Name: NF11703_high_108
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_108 |
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Alignment Details
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 44798533 - 44798606
Alignment:
| Q |
129 |
caaaacatcacactctttggtgatgcttcctacacagacactgccattactctcacaaaacaacaacactcttg |
202 |
Q |
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| T |
44798533 |
caaaacatcacactctttggtgatgcttcctacacagacacttccattactctcacaaaacaacaacacacttg |
44798606 |
T |
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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 44798424 - 44798462
Alignment:
| Q |
20 |
ttgaaaacttcatcactcttaattctacacaatgctcag |
58 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |
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| T |
44798424 |
ttgaaaacttcaccactcttaattctacacaatgctcag |
44798462 |
T |
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