View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_high_115 (Length: 218)
Name: NF11703_high_115
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_115 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 40 - 205
Target Start/End: Original strand, 25728366 - 25728531
Alignment:
| Q |
40 |
aatggttagtgatttctagggcattatttggtgacctaatatgggaccaaagagaaaaaggggaaagactagacgtaacacattcgaaattgatgccaat |
139 |
Q |
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| T |
25728366 |
aatggttagtgatttctagggcattatttggtgacctaatatgggaccaaagagaaaaaggggaaagactagacgtaacacattcgaaattgatgccaat |
25728465 |
T |
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| Q |
140 |
ggttgtggcactccagagaatactttttcatccaaaacttctacatatgcattggatatgctactc |
205 |
Q |
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| T |
25728466 |
ggttgtggcactccagagaatactttttcatccaaaacttctacatatgcattggatatgctactc |
25728531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 25733753 - 25733830
Alignment:
| Q |
123 |
tcgaaattgatgccaatggttgtggcactccagagaatactttttcatccaaaacttctacatatgcattggatatgc |
200 |
Q |
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| T |
25733753 |
tcgaaagtgatgccaatggttgtggcactcctgagaatacttttccatcaaaaacttctacatctgcattggatatgc |
25733830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 53 - 185
Target Start/End: Original strand, 25733182 - 25733311
Alignment:
| Q |
53 |
ttctagggcattatttggtgacctaatatgggaccaaagagaaaaaggggaaagactagacgtaacacattcgaaattgatgccaatggttgtggcactc |
152 |
Q |
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| T |
25733182 |
ttctagggcattatttggtgacttaatatgggaccaaagagaagaggaaggaagaccagtcgtaa---agttcaaagtgatgccaatggttgtggcactc |
25733278 |
T |
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| Q |
153 |
cagagaatactttttcatccaaaacttctacat |
185 |
Q |
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| T |
25733279 |
aagagaatactatttcatcaaaagcttctacat |
25733311 |
T |
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