View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11703_high_117 (Length: 213)
Name: NF11703_high_117
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_117 |
 | |
|
| [»] scaffold0870 (1 HSPs) |
| | |
|
| [»] scaffold0889 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 28586261 - 28586082
Alignment:
| Q |
16 |
atgaactctatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtttgtttaatgcgtaccttctcnnnnnnnnnnn |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28586261 |
atgaaatctatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtttgtttaatgcgtaccttctc--gtgtgtgtg |
28586164 |
T |
|
| Q |
116 |
nctgtatatatataattttactataggagtatttagttagtaatatagtgaccaactataattgttgtgtagatttatttga |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28586163 |
tctgtatatatataattttactataggagtatttagttagtaatatagtgaccaactataattgttgtgtagatttatttga |
28586082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 28580104 - 28579935
Alignment:
| Q |
16 |
atgaactctatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtttgtttaatgcgtaccttctcnnnnnnnnnnn |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| |
|
|
| T |
28580104 |
atgaactctatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggttagtttaatacgtaccctctccaca------- |
28580012 |
T |
|
| Q |
116 |
nctgtatatatataattttactataggagtatttagttagtaatatagtgaccaactataattgttgtgtagatttatttga |
197 |
Q |
| |
|
| | |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28580011 |
--tttgaatatataa-tttac--taggagtatttagttagtaatatagtgactaactataattgttgtgtagatttatttga |
28579935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 28568208 - 28568132
Alignment:
| Q |
16 |
atgaactctatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtttgtttaat |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28568208 |
atgaactctatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtttgtttaat |
28568132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 28575051 - 28574883
Alignment:
| Q |
16 |
atgaactctatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtttgtttaatgcgtaccttctcnnnnnnnnnnn |
115 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||| || || |||||||||| ||||||| |||||| |||| |
|
|
| T |
28575051 |
atgaactctatgaattttcacttgcattccgcttgctgagacaaggaggccactatgtcaatgcaggttagtttaattcgtaccctctctaca------- |
28574959 |
T |
|
| Q |
116 |
nctgtatatatataattttactataggagtatttagttagtaatatagtgaccaactataattgttgtgtagatttatttga |
197 |
Q |
| |
|
| | ||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28574958 |
--tttgaatacataattttactataggagtat----ttagtaatatagtgactaactataattgttgtgtagatttatttga |
28574883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 26316109 - 26316033
Alignment:
| Q |
16 |
atgaactctatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtttgtttaat |
92 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
26316109 |
atgaactctacgaagttgcacttgcattccgcttgctcagacaaggaggacattatgtaaatgcaggttagtttaat |
26316033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 20618455 - 20618387
Alignment:
| Q |
16 |
atgaactctatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtt |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||| |||| || |||||||||| |
|
|
| T |
20618455 |
atgaactctatgaagttgcacttgcattccgtttgctcagacaaggaggctattatgtcaatgcaggtt |
20618387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 28568100 - 28568055
Alignment:
| Q |
152 |
ttagtaatatagtgaccaactataattgttgtgtagatttatttga |
197 |
Q |
| |
|
||||||||| | |||| ||||||||||||||||||||||||||||| |
|
|
| T |
28568100 |
ttagtaataaaatgactaactataattgttgtgtagatttatttga |
28568055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 4881 - 4957
Alignment:
| Q |
16 |
atgaactctatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtttgtttaat |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4881 |
atgaactctatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtttgtttaat |
4957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 4677 - 4737
Alignment:
| Q |
16 |
atgaactctatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaa |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4677 |
atgaactctatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaa |
4737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 24071732 - 24071644
Alignment:
| Q |
16 |
atgaactctatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtttgtttaatgcgtaccttctc |
104 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| |||||| |||| |
|
|
| T |
24071732 |
atgaactctatcaagttgcacttgcattccgcttgctcagacaaggaggccattatgtaaatgcaggtatgtttaaaacgtaccctctc |
24071644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 24071559 - 24071503
Alignment:
| Q |
141 |
ggagtatttagttagtaatatagtgaccaactataattgttgtgtagatttatttga |
197 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24071559 |
ggagtatttagttagtaatgtagtgactaactataattgttgtgtagatttatttga |
24071503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 2600824 - 2600875
Alignment:
| Q |
16 |
atgaactctatgaagttgcacttgcattccgcttgctgagacaaggaggcca |
67 |
Q |
| |
|
|||||||| |||||||||| ||| |||| |||||||| |||||||||||||| |
|
|
| T |
2600824 |
atgaactccatgaagttgcgcttacatttcgcttgctaagacaaggaggcca |
2600875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University