View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_high_13 (Length: 604)
Name: NF11703_high_13
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 146 - 592
Target Start/End: Original strand, 51650467 - 51650912
Alignment:
| Q |
146 |
gagaattgcttgcttgtttatcattcagattcaaattagtagtgattggcattgttaattatcaactttagacctcctttgagaacaaattcactatctt |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
51650467 |
gagaattgcttgcttgtttatcattcagattcaaattagtagtgattggcattgttaattatcaactttagacctcctttgagaacaaattcactatgtt |
51650566 |
T |
|
| Q |
246 |
gtatt-gcatgtttgaattgactatgagtttggcagaatcatggtgcgtcgtcaagattttggcaaaaattacaccaagtaacttcaacaaaatcagggt |
344 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51650567 |
gtatttgcatgtttgaattgactatgagtttggcagaatcatggtgcgtcgtcaagattttggcaaaaattacaccaagtaacttcaacaaaatcagggt |
51650666 |
T |
|
| Q |
345 |
accaccatgattttgccaaactcattgttgaatgaaacatgttctattagtatatttttatttagtagtgatcttttgtgtgtctgctttgatttcactg |
444 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
51650667 |
accaccatgattttgccaaactcattgttgaatgaaacatgttctattagtatatttttatttagtagtgatc--ttgtgtgtctgctttgatttcaccg |
51650764 |
T |
|
| Q |
445 |
aaatgtgnnnnnnnnacatatgcagacattgatgttgaatgacagaattcaaaaccctgattctcttcaacatgttctgaggaaagctgaagagtatcta |
544 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51650765 |
aaatgtgttttttttacatatgcagacattgatgttgaatgacagaattcaaaaccctgattctcttcaacatgttctgaggaaagctgaagagtatcta |
51650864 |
T |
|
| Q |
545 |
agcacaattgatcctgaaacaccatactcagaatttgaacacaggttc |
592 |
Q |
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| T |
51650865 |
agcacaattgatcctgaaacaccatactcagaatttgaacacaggttc |
51650912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 51650345 - 51650449
Alignment:
| Q |
1 |
tttctgctaaactcttccatgacaaggagagtttacatccacttttggaatttctcagacttcacagctacaagggaaaggtatctatctatttcttgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51650345 |
tttctgctaaactcttccatgacaaggagagtttacatccacttttggaatttctcagacttcacagctacaagggaaaggtatctatctatttcttgct |
51650444 |
T |
|
| Q |
101 |
cttga |
105 |
Q |
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||||| |
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| T |
51650445 |
cttga |
51650449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 465 - 587
Target Start/End: Complemental strand, 19155133 - 19155011
Alignment:
| Q |
465 |
tgcagacattgatgttgaatgacagaattcaaaaccctgattctcttcaacatgttctgaggaaagctgaagagtatctaagcacaattgatcctgaaac |
564 |
Q |
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||||||| ||||| ||||||||||||||||||| | ||||| |||||||||||| |||| | || ||||| ||||| ||| ||||| ||| ||||| |
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| T |
19155133 |
tgcagactatgatggtgaatgacagaattcaaaatctggattcacttcaacatgttttgagaactgcagaagattatcttcgcataattgctcccgaaac |
19155034 |
T |
|
| Q |
565 |
accatactcagaatttgaacaca |
587 |
Q |
| |
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||| ||||| ||||||||||||| |
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| T |
19155033 |
accttactcggaatttgaacaca |
19155011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 373
Target Start/End: Complemental strand, 35027540 - 35027494
Alignment:
| Q |
327 |
cttcaacaaaatcagggtaccaccatgattttgccaaactcattgtt |
373 |
Q |
| |
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|||||||||||| | ||||||||| |||||||| ||||||||||||| |
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|
| T |
35027540 |
cttcaacaaaattacggtaccaccttgattttgacaaactcattgtt |
35027494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 25719764 - 25719809
Alignment:
| Q |
327 |
cttcaacaaaatcagggtaccaccatgattttgccaaactcattgt |
372 |
Q |
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|||||||||||||| ||||||| |||||||||| |||| ||||||| |
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| T |
25719764 |
cttcaacaaaatcacggtaccatcatgattttggcaaattcattgt |
25719809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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