View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11703_high_14 (Length: 592)

Name: NF11703_high_14
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11703_high_14
NF11703_high_14
[»] chr7 (8 HSPs)
chr7 (42-474)||(23186967-23187413)
chr7 (269-375)||(28733762-28733870)
chr7 (315-375)||(33887904-33887964)
chr7 (414-494)||(23178731-23178813)
chr7 (545-577)||(23187411-23187443)
chr7 (261-371)||(39316073-39316184)
chr7 (314-374)||(9097746-9097805)
chr7 (417-462)||(23171318-23171365)
[»] chr5 (7 HSPs)
chr5 (261-374)||(34032087-34032201)
chr5 (262-373)||(2816174-2816287)
chr5 (261-375)||(37885613-37885726)
chr5 (261-374)||(17098183-17098297)
chr5 (315-357)||(26407564-26407606)
chr5 (315-375)||(141866-141925)
chr5 (315-375)||(3758194-3758254)
[»] chr3 (6 HSPs)
chr3 (232-374)||(30082852-30082998)
chr3 (282-374)||(37708432-37708525)
chr3 (259-371)||(38457212-38457324)
chr3 (286-374)||(8703336-8703425)
chr3 (286-374)||(9055223-9055312)
chr3 (253-375)||(40392387-40392509)
[»] chr1 (5 HSPs)
chr1 (261-375)||(36621927-36622042)
chr1 (283-374)||(4521027-4521119)
chr1 (320-373)||(64883-64936)
chr1 (314-375)||(9221274-9221335)
chr1 (315-375)||(8836543-8836603)
[»] scaffold0009 (1 HSPs)
scaffold0009 (269-375)||(189063-189170)
[»] chr8 (9 HSPs)
chr8 (269-400)||(22209375-22209507)
chr8 (315-374)||(20279607-20279666)
chr8 (315-374)||(21066234-21066293)
chr8 (315-375)||(27776541-27776601)
chr8 (315-365)||(1576414-1576464)
chr8 (321-374)||(8108305-8108359)
chr8 (290-371)||(21307619-21307701)
chr8 (314-375)||(12782771-12782832)
chr8 (344-400)||(40298850-40298906)
[»] scaffold0192 (1 HSPs)
scaffold0192 (269-398)||(15900-16030)
[»] chr2 (7 HSPs)
chr2 (321-375)||(16717603-16717657)
chr2 (321-373)||(37617447-37617499)
chr2 (315-369)||(35312103-35312157)
chr2 (315-375)||(33275945-33276005)
chr2 (336-374)||(3882611-3882649)
chr2 (261-356)||(35477685-35477782)
chr2 (314-374)||(8964387-8964447)
[»] chr6 (2 HSPs)
chr6 (283-400)||(30509285-30509403)
chr6 (315-371)||(34921565-34921621)
[»] chr4 (9 HSPs)
chr4 (290-374)||(24369402-24369487)
chr4 (280-375)||(44670846-44670942)
chr4 (321-373)||(50086466-50086518)
chr4 (261-375)||(54700841-54700954)
chr4 (280-369)||(10095656-10095746)
chr4 (321-375)||(29352463-29352517)
chr4 (314-374)||(39274956-39275016)
chr4 (315-375)||(41956482-41956542)
chr4 (260-375)||(50774955-50775071)


Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 42 - 474
Target Start/End: Original strand, 23186967 - 23187413
Alignment:
Q  42 ggtcgttgactattattgtcttcgagagagtgtcgataaaattctctatcaatcattgattattatta--------cgtcatatcacacgaacgtagttt 133  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  23186967 ggtcgttgactattattgtcttcgagagattgtcgataaaattctctatcaatcattgattattattacgtcattacgtcatatcacacgaacgtagttt 23187066  T
Q  134 ccaatgttcttgcgcagaagttcataaaacttttcgtggaaacaaggtcgattgaccgaagaaaaataggaggttgactataaattataaattatagaga 233  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||  | ||    
T  23187067 ccaatgttcttgcgcagaacttcataaaacttttcgtggaaacaaggtcgattgattgaagaaaaataggaggttgactataaattataaattactggga 23187166  T
Q  234 aatgttaaagagtaccttcgagacccttttaagatccataaataataaatatttttaaaaatacatgtaatcattgtttagaaattgaaatatttaattt 333  Q
    |||||||| |||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23187167 aatgttaacgagtgccttcgagacacttttaagatccataaatagtaaatatttttaaaaatacatgtaattattgtttagaaattgaaatatttaattt 23187266  T
Q  334 tattaaagagtaattgtttattttagaatgcttaaagagtgtattagagacactggttaataagaccataaattatacatgtgt------atataaaggg 427  Q
    |||||||||||||||| |||||||| ||||||||||||||| ||| | |||||| |||||||||||||||||||||||| ||||      ||||||| ||    
T  23187267 tattaaagagtaattgcttattttaaaatgcttaaagagtgcattggggacactcgttaataagaccataaattatacaggtgtatataaatataaaagg 23187366  T
Q  428 taaagctacaggtaaataagactcaaaagccaacagcataaaattag 474  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  23187367 taaagctacaggtaaataagactcaaaagccaacagcatataattag 23187413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 269 - 375
Target Start/End: Original strand, 28733762 - 28733870
Alignment:
Q  269 ccataaataataaatatttttaaaaatacatgtaatcattgt-ttagaaattgaaatatttaa-ttttattaaagagtaattgtttattttagaatgctt 366  Q
    |||||||||  |||||||||||||||| ||||||||||||||  | ||| |  |||||||||| |||| ||||||| ||||||||||||||| |||||||    
T  28733762 ccataaatagaaaatatttttaaaaatgcatgtaatcattgtcatggaattcaaaatatttaactttttttaaagaataattgtttattttaaaatgctt 28733861  T
Q  367 aaagagtgt 375  Q
    |||||||||    
T  28733862 aaagagtgt 28733870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 33887904 - 33887964
Alignment:
Q  315 aaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtgt 375  Q
    |||||||||||||| | ||| ||||||| ||||| |||||||| |||||||||||||||||    
T  33887904 aaattgaaatatttgacttttttaaagaataattatttattttggaatgcttaaagagtgt 33887964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 23178731 - 23178813
Alignment:
Q  414 gtgtatataaagggtaaagct--acaggtaaataagactcaaaagccaacagcataaaattagatatgggaaattttttctct 494  Q
    ||||||||||||||||||| |  ||||| |||||||||||||||||||||| |||| |   ||| ||||||||||||| ||||    
T  23178731 gtgtatataaagggtaaagttgtacaggaaaataagactcaaaagccaacaacatatatacagaaatgggaaatttttgctct 23178813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 545 - 577
Target Start/End: Original strand, 23187411 - 23187443
Alignment:
Q  545 tagcattgtttatgaatatgataataacattgt 577  Q
    |||||||||||||||||||||||||||||||||    
T  23187411 tagcattgtttatgaatatgataataacattgt 23187443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 39316184 - 39316073
Alignment:
Q  261 tttaagatccataaataataaatatttttaaaaatacatgtaatcattgt-ttagaaattgaaatatttaattttattaaagagtaattgtttattttag 359  Q
    ||||||| ||| ||| |||||||||||||||||||  ||||| | ||| | ||  |||| ||||||||| | || | |||||| |||||  |||||||||    
T  39316184 tttaagacccacaaacaataaatatttttaaaaatgtatgtacttattatcttgaaaatcgaaatatttgacttcaataaagaataattacttattttag 39316085  T
Q  360 aatgcttaaaga 371  Q
    ||||||||||||    
T  39316084 aatgcttaaaga 39316073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 374
Target Start/End: Original strand, 9097746 - 9097805
Alignment:
Q  314 gaaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtg 374  Q
    ||||||||||||||| ||||| || || | ||||||||||| |||| ||||||||||||||    
T  9097746 gaaattgaaatatttgattttttttaaaa-taattgtttatattagtatgcttaaagagtg 9097805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 462
Target Start/End: Original strand, 23171318 - 23171365
Alignment:
Q  417 tatataaagggtaaagct--acaggtaaataagactcaaaagccaaca 462  Q
    ||||||||||||||||||  ||| | ||||||||||||||||||||||    
T  23171318 tatataaagggtaaagctgtacaagaaaataagactcaaaagccaaca 23171365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 261 - 374
Target Start/End: Original strand, 34032087 - 34032201
Alignment:
Q  261 tttaagatccataaataataaatatttttaaaaatacatgtaatcattgt-ttagaaattgaaatatttaattttattaaagagtaattgtttattttag 359  Q
    ||||||| |||||| || ||| ||||||||||||| |||||||||||||  || ||||||||||||||||| ||| ||||||| |||||  |||||||||    
T  34032087 tttaagacccataagtagtaagtatttttaaaaatgcatgtaatcattgcctttgaaattgaaatatttaacttttttaaagaataattacttattttag 34032186  T
Q  360 aatgcttaaagagtg 374  Q
    |||||||||||||||    
T  34032187 aatgcttaaagagtg 34032201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 373
Target Start/End: Complemental strand, 2816287 - 2816174
Alignment:
Q  262 ttaagatccataaataataaatatttttaaaaa-tacatgtaatcattgtttagaaa-ttgaaatatttaattttattaaagagtaattgtttattttag 359  Q
    |||||| ||||||||| |||||||||  ||||| | |||||||||||||| | |||| ||||||||||| ||||| ||||||| |||||| || ||||      
T  2816287 ttaagacccataaatagtaaatatttcaaaaaaatgcatgtaatcattgtcttgaaaattgaaatatttgatttttttaaagaataattgcttcttttga 2816188  T
Q  360 aatgcttaaagagt 373  Q
    ||||||||||||||    
T  2816187 aatgcttaaagagt 2816174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 261 - 375
Target Start/End: Complemental strand, 37885726 - 37885613
Alignment:
Q  261 tttaagatccataaataataaatatttttaaaaatacatgtaatcattgt-ttagaaattgaaatatttaattttattaaagagtaattgtttattttag 359  Q
    ||||||||| ||||||||||| ||||| ||||||| | |||||| | | | ||| |||||||||||||||||||| |||||   |||||||||||||||     
T  37885726 tttaagatc-ataaataataagtatttataaaaatgcgtgtaattaatatattaaaaattgaaatatttaatttt-ttaaaacctaattgtttattttaa 37885629  T
Q  360 aatgcttaaagagtgt 375  Q
    |||| ||||| |||||    
T  37885628 aatgtttaaaaagtgt 37885613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 374
Target Start/End: Original strand, 17098183 - 17098297
Alignment:
Q  261 tttaagatccataaataataaatatttttaaaaatacatgtaatcattgt-ttagaaattgaaatatttaattttattaaagagtaattgtttattttag 359  Q
    |||||||  |||||||| || ||||||||||||||  ||||||||||||| || ||||| ||||||||| | ||| ||||| | |||||| |||||||      
T  17098183 tttaagactcataaatagtagatatttttaaaaatgaatgtaatcattgtcttggaaatcgaaatatttgacttttttaaataataattgcttattttgt 17098282  T
Q  360 aatgcttaaagagtg 374  Q
     ||| ||||||||||    
T  17098283 gatgtttaaagagtg 17098297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 357
Target Start/End: Original strand, 26407564 - 26407606
Alignment:
Q  315 aaattgaaatatttaattttattaaagagtaattgtttatttt 357  Q
    |||||||||||||||||||||||||||| ||||| ||||||||    
T  26407564 aaattgaaatatttaattttattaaagaataattttttatttt 26407606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 141925 - 141866
Alignment:
Q  315 aaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtgt 375  Q
    ||||||||||||| | |||| | ||||| |||||||||||||| | |||||||||||||||    
T  141925 aaattgaaatattgactttt-taaaagaataattgtttattttggtatgcttaaagagtgt 141866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 3758254 - 3758194
Alignment:
Q  315 aaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtgt 375  Q
    |||| ||||||||| | ||| ||||||| |||||| |||||||| |||| |||||||||||    
T  3758254 aaatcgaaatatttgacttttttaaagaataattgattattttaaaatgtttaaagagtgt 3758194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 232 - 374
Target Start/End: Complemental strand, 30082998 - 30082852
Alignment:
Q  232 gaaatgttaaagagtaccttcgagaccct-tttaagatccataaataataaatatttttaaaaatacatgtaatcattg-tttagaaattgaaatattta 329  Q
    |||||||||| ||||  ||||| ||| || ||||||| | ||||||| ||| ||||||||||||| ||||||||||||  ||||| |||||||||||||     
T  30082998 gaaatgttaacgagtgtcttcgggacactctttaagacctataaatagtaagtatttttaaaaatccatgtaatcatttctttaggaattgaaatatttg 30082899  T
Q  330 a--ttttattaaagagtaattgtttattttagaatgcttaaagagtg 374  Q
    |  |||| ||||||| ||| || ||||||||||||||||||||||||    
T  30082898 acttttttttaaagaataactgcttattttagaatgcttaaagagtg 30082852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 282 - 374
Target Start/End: Complemental strand, 37708525 - 37708432
Alignment:
Q  282 atatttttaaaaatacatgtaatcattgtttagaaa-ttgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtg 374  Q
    |||||| |||||||||||||||||| ||  | |||| ||||||| ||||| ||| ||||||| |||||| ||||||||  ||||||||||||||    
T  37708525 atatttataaaaatacatgtaatcagtgcattgaaaattgaaatgtttaacttttttaaagactaattgcttattttaatatgcttaaagagtg 37708432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 259 - 371
Target Start/End: Original strand, 38457212 - 38457324
Alignment:
Q  259 cttttaagatccataaataataaatatttttaaaaatacatgtaatcattg-tttagaaattgaaatatttaattttattaaagagtaattgtttatttt 357  Q
    ||||||||| ||||||||| ||| |||||   |||||||||||||||| ||  ||  ||||  |||||||||||||| ||||||| |||||| ||||| |    
T  38457212 cttttaagaaccataaatagtaagtatttacgaaaatacatgtaatcaatgcattgaaaatcaaaatatttaatttt-ttaaagaataattgcttattat 38457310  T
Q  358 agaatgcttaaaga 371  Q
    ||||||||||||||    
T  38457311 agaatgcttaaaga 38457324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 286 - 374
Target Start/End: Original strand, 8703336 - 8703425
Alignment:
Q  286 ttttaaaaatacatgtaatcattgt-ttagaaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtg 374  Q
    |||||||||| |||||||| ||||  ||||||||  |||||||||| ||| ||||| |  ||||| |||||||||||||||||| |||||    
T  8703336 ttttaaaaatgcatgtaatgattgccttagaaatcaaaatatttaacttttttaaataacaattgcttattttagaatgcttaacgagtg 8703425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 286 - 374
Target Start/End: Original strand, 9055223 - 9055312
Alignment:
Q  286 ttttaaaaatacatgtaatcattgt-ttagaaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtg 374  Q
    |||||||||| |||||||| ||||  ||||||||  |||||||||| ||| ||||| |  ||||| |||||||||||||||||| |||||    
T  9055223 ttttaaaaatgcatgtaatgattgccttagaaatcaaaatatttaacttttttaaataacaattgcttattttagaatgcttaacgagtg 9055312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 375
Target Start/End: Complemental strand, 40392509 - 40392387
Alignment:
Q  253 gagacccttttaagatccataaataataaatatttttaaaaatacatgtaatcattgt-ttagaaattgaaatatttaattttattaaagagtaattgtt 351  Q
    ||||| ||||||||   ||||| || ||||||||| | |||||| ||||||||| ||  ||||||||  |||||||||| ||| |||||||||||||  |    
T  40392509 gagacacttttaaggaacataagtagtaaatatttatgaaaatatatgtaatcaatgcattagaaataaaaatatttaacttttttaaagagtaattact 40392410  T
Q  352 tattttagaatgcttaaagagtgt 375  Q
    | ||||| ||| ||||||||||||    
T  40392409 t-ttttaaaatacttaaagagtgt 40392387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 261 - 375
Target Start/End: Complemental strand, 36622042 - 36621927
Alignment:
Q  261 tttaagatccataaataataaatatttttaaaaatacatgtaatcattg-tttagaaattgaaatatttaattttattaaagagtaattgtttattttag 359  Q
    ||||||| |||||| |||||| ||||||||||||| ||||||||||||| ||| |||||  |||||||||| ||| ||||||| |||||| |||||||      
T  36622042 tttaagacccataagtaataagtatttttaaaaatgcatgtaatcattgttttggaaatcaaaatatttaacttttttaaagaataattgcttattttga 36621943  T
Q  360 aatgcttaaagagtgt 375  Q
    |||| |||||||||||    
T  36621942 aatgtttaaagagtgt 36621927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 374
Target Start/End: Original strand, 4521027 - 4521119
Alignment:
Q  283 tatttttaaaaatacatgtaatcattgt-ttagaaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtg 374  Q
    ||||| |||||||||||||||||| ||  || ||||||||||| ||||| ||| ||||||| |||| | || |||||| ||||||||||||||    
T  4521027 tatttataaaaatacatgtaatcaatgcattggaaattgaaatgtttaacttttttaaagaataatcgcttgttttagtatgcttaaagagtg 4521119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 320 - 373
Target Start/End: Original strand, 64883 - 64936
Alignment:
Q  320 gaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagt 373  Q
    |||||||||||  || ||||||| |||||||||||||||||||| |||||||||    
T  64883 gaaatatttaacgtttttaaagaataattgtttattttagaatgtttaaagagt 64936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 375
Target Start/End: Original strand, 9221274 - 9221335
Alignment:
Q  314 gaaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtgt 375  Q
    ||||| ||||||||||| |||  |||||| ||||||||||||||| |||  |||||||||||    
T  9221274 gaaatcgaaatatttaacttttctaaagaataattgtttattttaaaatagttaaagagtgt 9221335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 8836543 - 8836603
Alignment:
Q  315 aaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtgt 375  Q
    |||| ||||||||| | ||| ||||||| |||||||||||||   ||||||||||||||||    
T  8836543 aaatcgaaatatttgacttttttaaagaataattgtttatttcgaaatgcttaaagagtgt 8836603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 269 - 375
Target Start/End: Complemental strand, 189170 - 189063
Alignment:
Q  269 ccataaataataaatatttttaaaaatacatgtaatcattgt-ttagaaattgaaatatttaattttattaaagagtaattgtttattttagaatgctta 367  Q
    ||||||||||||| ||||| | ||||||  |||||| | ||| |||||||| ||||||||||| ||| ||||||| |||||| |||||||| ||||||||    
T  189170 ccataaataataagtatttatgaaaatatgtgtaattaatgtattagaaatagaaatatttaacttttttaaagaataattgcttattttaaaatgctta 189071  T
Q  368 aagagtgt 375  Q
    ||||||||    
T  189070 aagagtgt 189063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 269 - 400
Target Start/End: Complemental strand, 22209507 - 22209375
Alignment:
Q  269 ccataaataataaatatttttaaaaatacatgtaatcattgt-ttagaaattgaaatatttaattttattaaagagtaattgtttattttagaatgctta 367  Q
    ||||||||| ||| ||||| | |||||| ||||||||| ||| || |||||  |||||||||| ||| |||| || |||||| || ||||| ||||||||    
T  22209507 ccataaatagtaagtatttatgaaaatatatgtaatcaatgtcttggaaatcaaaatatttaacttttttaaggaataattgcttcttttaaaatgctta 22209408  T
Q  368 aagagtgtattagagacactggttaataagacc 400  Q
    ||||||||    |||||||| ||||||||||||    
T  22209407 aagagtgtcccggagacacttgttaataagacc 22209375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 315 - 374
Target Start/End: Original strand, 20279607 - 20279666
Alignment:
Q  315 aaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtg 374  Q
    |||||||||||||| | ||| | ||||| |||||| ||||||||||||||||||||||||    
T  20279607 aaattgaaatatttgactttttgaaagaataattgcttattttagaatgcttaaagagtg 20279666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 315 - 374
Target Start/End: Original strand, 21066234 - 21066293
Alignment:
Q  315 aaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtg 374  Q
    |||||||||||||| | ||| | ||||| |||||| ||||||||||||||||||||||||    
T  21066234 aaattgaaatatttgactttttgaaagaataattgcttattttagaatgcttaaagagtg 21066293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 27776601 - 27776541
Alignment:
Q  315 aaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtgt 375  Q
    ||||| |||||||||||||| ||||| | |||| |||||||||| |||| |||||||||||    
T  27776601 aaattaaaatatttaatttttttaaataataatcgtttattttaaaatgtttaaagagtgt 27776541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 1576414 - 1576464
Alignment:
Q  315 aaattgaaatatttaattttattaaagagtaattgtttattttagaatgct 365  Q
    |||| |||||||||| |||| ||| ||| ||||||||||||||||||||||    
T  1576414 aaatcgaaatatttattttttttacagaataattgtttattttagaatgct 1576464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 374
Target Start/End: Original strand, 8108305 - 8108359
Alignment:
Q  321 aaatatttaattttattaaagagtaa-ttgtttattttagaatgcttaaagagtg 374  Q
    |||||||||| ||| |||| || ||| ||||||||||||||||||||||||||||    
T  8108305 aaatatttaacttttttaatgaataacttgtttattttagaatgcttaaagagtg 8108359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 21307701 - 21307619
Alignment:
Q  290 aaaaatacatgtaatcattg-tttagaaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaaga 371  Q
    ||||||||||||||||| || ||| |||||  |||||||| | ||| || ||||  ||||||||||||||||||| |||||||    
T  21307701 aaaaatacatgtaatcaatgattttgaaatctaaatattttaatttttttaagaaaaattgtttattttagaatgtttaaaga 21307619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 375
Target Start/End: Complemental strand, 12782832 - 12782771
Alignment:
Q  314 gaaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtgt 375  Q
    ||||| |||||||| || ||| ||||||| ||||||  |||||||| |||||||||||||||    
T  12782832 gaaatcgaaatattcaacttttttaaagaataattgcatattttagtatgcttaaagagtgt 12782771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 40298906 - 40298850
Alignment:
Q  344 taattgtttattttagaatgcttaaagagtgtattagagacactggttaataagacc 400  Q
    |||||| |||||||| ||||||||||||||||  ||| |||||| ||||| ||||||    
T  40298906 taattgcttattttataatgcttaaagagtgtcatagggacactcgttaacaagacc 40298850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 269 - 398
Target Start/End: Original strand, 15900 - 16030
Alignment:
Q  269 ccataaataataaatatttttaaaaatacatgtaatcattgtttagaaatt-gaaatatttaattttattaaagagtaattgtttattttagaatgctta 367  Q
    ||||||||||||||||| ||||||||   ||| ||||| ||||| |||| | |||||||||||  || || |||| ||||| || |||||| |||| |||    
T  15900 ccataaataataaatatatttaaaaaattatgcaatcaatgttttgaaaatcgaaatatttaacatttttcaagaataattattaattttaaaatgttta 15999  T
Q  368 aagagtgtattagagacactggttaataaga 398  Q
    ||||||||| |||| ||||| ||||| ||||    
T  16000 aagagtgtactagaaacactcgttaacaaga 16030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 321 - 375
Target Start/End: Complemental strand, 16717657 - 16717603
Alignment:
Q  321 aaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtgt 375  Q
    |||||||||||||| ||||||| |||||  |||||||||||||||||||||||||    
T  16717657 aaatatttaatttttttaaagaataattacttattttagaatgcttaaagagtgt 16717603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 37617447 - 37617499
Alignment:
Q  321 aaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagt 373  Q
    |||||||||||||| ||||||| ||||| ||||||||| ||||||||||||||    
T  37617447 aaatatttaatttttttaaagaataattatttattttaaaatgcttaaagagt 37617499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 35312157 - 35312103
Alignment:
Q  315 aaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaa 369  Q
    ||||| |||||||||||||| |||||||  | |||||||||||||||||||||||    
T  35312157 aaattaaaatatttaatttttttaaagaaaatttgtttattttagaatgcttaaa 35312103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 33275945 - 33276005
Alignment:
Q  315 aaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtgt 375  Q
    |||||||||||||||| ||| ||||| | |||||  || ||||||||||||||||||||||    
T  33275945 aaattgaaatatttaacttttttaaaaaataatttcttgttttagaatgcttaaagagtgt 33276005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 374
Target Start/End: Complemental strand, 3882649 - 3882611
Alignment:
Q  336 ttaaagagtaattgtttattttagaatgcttaaagagtg 374  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  3882649 ttaaagaataattgcttattttagaatgcttaaagagtg 3882611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 356
Target Start/End: Original strand, 35477685 - 35477782
Alignment:
Q  261 tttaagatccataaataataaatatttttaaaaatacatgtaatcattgt-ttagaaattgaaatattt-aattttattaaagagtaattgtttattt 356  Q
    ||||||| | |||| || ||| ||||||||||||| ||||| |||||||| || ||||| ||||||||| | |||| ||||||| |||||| ||||||    
T  35477685 tttaagacctataagtagtaagtatttttaaaaatgcatgtcatcattgtcttggaaatcgaaatatttgactttttttaaagaataattgcttattt 35477782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 8964447 - 8964387
Alignment:
Q  314 gaaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtg 374  Q
    ||||||||||||||| | ||| ||||||| |||||  ||| ||||||||||||||| ||||    
T  8964447 gaaattgaaatattttacttttttaaagaataattacttaatttagaatgcttaaacagtg 8964387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 400
Target Start/End: Complemental strand, 30509403 - 30509285
Alignment:
Q  283 tatttttaaaaatacatgtaatcattgtttagaaatt-gaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtgtattaga 381  Q
    ||||| |||||||||||||||||| ||  | |||| | ||||| ||| ||||| ||||||| |||||| ||||||| | |||||||||||||||    ||    
T  30509403 tatttataaaaatacatgtaatcaatgcattgaaaatcgaaatgtttgatttttttaaagaataattgcttattttggtatgcttaaagagtgttccgga 30509304  T
Q  382 gacactggttaataagacc 400  Q
    |||||| ||||| ||||||    
T  30509303 gacactcgttaacaagacc 30509285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 34921621 - 34921565
Alignment:
Q  315 aaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaaga 371  Q
    ||||| |||||||||| ||| ||||||| |||||| |||||||||||||| ||||||    
T  34921621 aaattaaaatatttaacttttttaaagaataattgattattttagaatgcctaaaga 34921565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 290 - 374
Target Start/End: Complemental strand, 24369487 - 24369402
Alignment:
Q  290 aaaaatacatgtaatcattg-tttagaaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtg 374  Q
    |||||||||| |||||| || ||| ||||||||||| ||| | |||  |||||| |||||||||||||||| ||| ||||||||||    
T  24369487 aaaaatacatataatcagtgctttggaaattgaaatgtttgacttttataaagaataattgtttattttagtatgtttaaagagtg 24369402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 375
Target Start/End: Original strand, 44670846 - 44670942
Alignment:
Q  280 aaatatttttaaaaatacatgtaatcattgt-ttagaaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtgt 375  Q
    |||||||| |||||||| ||||||| ||||  || ||||| ||||||||||||||| |||||   ||||| ||| |||||| |||||||||| ||||    
T  44670846 aaatatttataaaaatatatgtaattattgcattggaaatcgaaatatttaatttttttaaaagataattatttgttttagtatgcttaaagtgtgt 44670942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 50086466 - 50086518
Alignment:
Q  321 aaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagt 373  Q
    |||||||| ||||| ||||||| |||||||||||||| ||||| |||||||||    
T  50086466 aaatatttgatttttttaaagaataattgtttattttggaatgtttaaagagt 50086518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 375
Target Start/End: Original strand, 54700841 - 54700954
Alignment:
Q  261 tttaagatccataaataataaatatttttaaaaatacatgtaatcattg-tttagaaattgaaatatttaattttattaaagagtaattgtttattttag 359  Q
    ||||||| |||||| || ||| ||||||||||||| |||||||||||||  || |||||  |||||||| | ||  || |||| |||||  ||||||||     
T  54700841 tttaagacccataagtagtaagtatttttaaaaatgcatgtaatcattgccttggaaatcaaaatatttgactt--tttaagaataattacttattttaa 54700938  T
Q  360 aatgcttaaagagtgt 375  Q
    ||||||||||||||||    
T  54700939 aatgcttaaagagtgt 54700954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 10095656 - 10095746
Alignment:
Q  280 aaatatttttaaaaatacatgtaatcattgtttagaaatt-gaaatatttaattttattaaagagtaattgtttattttagaatgcttaaa 369  Q
    |||||||| ||||||| |||||||||||||  | |||| | ||||||||| ||||| |||||   |||||||||||||||| ||| |||||    
T  10095656 aaatatttataaaaatgcatgtaatcattgcattgaaaatcgaaatatttgatttttttaaaagataattgtttattttagtatgtttaaa 10095746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 375
Target Start/End: Complemental strand, 29352517 - 29352463
Alignment:
Q  321 aaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtgt 375  Q
    |||||||| ||||| | ||||| |||||| ||||||||||||| |||||||||||    
T  29352517 aaatattttattttttaaaagaataattgcttattttagaatgattaaagagtgt 29352463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 39275016 - 39274956
Alignment:
Q  314 gaaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtg 374  Q
    ||||||||||||||| ||||| | ||| | |||||||||| ||| ||||||||||| ||||    
T  39275016 gaaattgaaatatttgattttttaaaaaaataattgtttacttttgaatgcttaaatagtg 39274956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 41956482 - 41956542
Alignment:
Q  315 aaattgaaatatttaattttattaaagagtaattgtttattttagaatgcttaaagagtgt 375  Q
    |||||||||||||||| ||| ||||||| || ||  ||||||| || ||||||||||||||    
T  41956482 aaattgaaatatttaaatttcttaaagaatactttcttattttggattgcttaaagagtgt 41956542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 375
Target Start/End: Complemental strand, 50775071 - 50774955
Alignment:
Q  260 ttttaagatccataaataataaatatttttaaaaatacatgtaatcattgt-ttagaaattgaaatatttaattttattaaagagtaattgtttatttta 358  Q
    ||||||||  ||||| |||||||||||| | ||||||  |||||||| | | ||  ||||  |||||||||| ||| ||||||| |||||  ||||||||    
T  50775071 ttttaagaatcataagtaataaatatttatgaaaatatgtgtaatcaatatgttgaaaatcaaaatatttaacttttttaaagaataattacttatttta 50774972  T
Q  359 gaatgcttaaagagtgt 375  Q
    |||| |||||| |||||    
T  50774971 gaatacttaaaaagtgt 50774955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University