View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11703_high_15 (Length: 582)

Name: NF11703_high_15
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11703_high_15
NF11703_high_15
[»] chr7 (7 HSPs)
chr7 (356-543)||(41851159-41851347)
chr7 (1-153)||(41850402-41850554)
chr7 (300-357)||(41850851-41850908)
chr7 (468-536)||(30061171-30061240)
chr7 (409-530)||(684971-685092)
chr7 (467-502)||(22815837-22815872)
chr7 (320-352)||(43250179-43250211)
[»] chr8 (3 HSPs)
chr8 (433-510)||(20896181-20896259)
chr8 (420-533)||(6261048-6261160)
chr8 (464-538)||(44148236-44148306)
[»] chr4 (7 HSPs)
chr4 (421-538)||(44015394-44015512)
chr4 (412-486)||(19473024-19473098)
chr4 (464-512)||(1208719-1208763)
chr4 (464-510)||(30643617-30643664)
chr4 (464-542)||(53176826-53176905)
chr4 (321-351)||(43466097-43466127)
chr4 (316-352)||(9162069-9162105)
[»] chr6 (3 HSPs)
chr6 (392-548)||(8585683-8585840)
chr6 (426-532)||(26847137-26847244)
chr6 (316-352)||(15722535-15722571)
[»] chr2 (3 HSPs)
chr2 (464-564)||(40204752-40204853)
chr2 (445-486)||(38529886-38529927)
chr2 (316-352)||(18373850-18373886)
[»] chr5 (1 HSPs)
chr5 (392-510)||(33922815-33922934)
[»] chr1 (3 HSPs)
chr1 (314-352)||(16836134-16836172)
chr1 (316-352)||(37669401-37669437)
chr1 (316-352)||(52714981-52715017)
[»] scaffold0085 (1 HSPs)
scaffold0085 (321-357)||(22891-22927)
[»] chr3 (2 HSPs)
chr3 (316-352)||(35074122-35074158)
chr3 (464-527)||(39488506-39488570)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 1e-92; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 356 - 543
Target Start/End: Original strand, 41851159 - 41851347
Alignment:
Q  356 tatgtaattttagaatgagtatttgtatttgcacaagtttcacttggatcacgtaggttttgatgacattggtgagattagtgcatttgagataagagaa 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41851159 tatgtaattttagaatgagtatttgtatttgcacaagtttcacttggatcacgtaggttttgataacattggtgagattagtgcatttgagataagagaa 41851258  T
Q  456 aatagtttatgaatgattaaaataaatta-ttacattagagagaatgattgattaaaatagagataaaaataatgtcaccaaaaactaa 543  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41851259 aatagtttatgaatgattaaaataaattatttacattagagagaatgattgattaaaatagagataaaaacaatgtcaccaaaaactaa 41851347  T

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Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 41850402 - 41850554
Alignment:
Q  1 aaattttccctattacatataggagggaaagagtaataatagactaaataaagaaactgagctatacataaatataatgtaatttcaaaagcagagagat 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41850402 aaattttccctattacatataggagggaaagagtaatagtagactaaataaagaaactgagctatacataaatataatgtaatttcaaaagcagagagat 41850501  T
Q  101 tgagaaaagctttatgttttgacttatgtgaattttgtatttgtatctatcag 153  Q
    ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||    
T  41850502 tgagaaaagttttatgttttaacttatgtgaattttgtatttgtgtctatcag 41850554  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 41850851 - 41850908
Alignment:
Q  300 ccaaaaaagagggaagaaaatgttgtctcaaaatgattgtacaaatatcatttttata 357  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  41850851 ccaaaaaagagggaagaaaatgttgtctaaaaatggttgtacaaatatcatttttata 41850908  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 468 - 536
Target Start/End: Original strand, 30061171 - 30061240
Alignment:
Q  468 atgattaaaataaattatt-acattagagagaatgattgattaaaatagagataaaaataatgtcaccaa 536  Q
    ||||||||||||||||||| | || ||||| ||| ||||||||| | ||||||||||| |||||||||||    
T  30061171 atgattaaaataaattatttagatgagagaaaattattgattaacagagagataaaaacaatgtcaccaa 30061240  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 530
Target Start/End: Original strand, 684971 - 685092
Alignment:
Q  409 taggttttg-atgacattggtgagattagtgcatttgagataagagaaaatagtttatgaatgattaaaataaattatt-acattagagagaatgattga 506  Q
    ||||||||| ||||||||||| |  ||| ||||||| |||| ||| | |||| |  ||||| ||||||||||||||||| | || ||| | |||||||||    
T  684971 taggttttgcatgacattggtta--ttaatgcattttagatgagaaagaatattagatgaaagattaaaataaattatttagatgagataaaatgattga 685068  T
Q  507 ttaaaatagagataaaaataatgt 530  Q
    |||||| |||||| ||||||||||    
T  685069 ttaaaagagagatgaaaataatgt 685092  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 502
Target Start/End: Original strand, 22815837 - 22815872
Alignment:
Q  467 aatgattaaaataaattattacattagagagaatga 502  Q
    ||||||||||||||||||||| ||||||||||||||    
T  22815837 aatgattaaaataaattattagattagagagaatga 22815872  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 43250211 - 43250179
Alignment:
Q  320 tgttgtctcaaaatgattgtacaaatatcattt 352  Q
    ||||||||||||||| |||||||||||||||||    
T  43250211 tgttgtctcaaaatggttgtacaaatatcattt 43250179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 433 - 510
Target Start/End: Original strand, 20896181 - 20896259
Alignment:
Q  433 ttagtgcatttgagataagagaaaatagtttatgaatgattaaaataaatta-ttacattagagagaatgattgattaa 510  Q
    ||||||||||| |||| ||||| |||  | |||||||||||||||||||||| ||| || |||||||||||||||||||    
T  20896181 ttagtgcattttagatgagagataatgatatatgaatgattaaaataaattatttagatgagagagaatgattgattaa 20896259  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 533
Target Start/End: Complemental strand, 6261160 - 6261048
Alignment:
Q  420 gacattggtgagattagtgcatttgagataagagaaaatagtttatgaatgattaaaataaatta-ttacattagagagaatgattgattaaaatagaga 518  Q
    ||||||||||| |||||| ||||| |||| ||| | ||||||| |||||| ||| |||||||||| ||| || ||||||||| ||||||||||| |||||    
T  6261160 gacattggtgacattagtacattttagatgagaaagaatagttgatgaataattcaaataaattatttagatgagagagaat-attgattaaaa-agaga 6261063  T
Q  519 taaaaataatgtcac 533  Q
    || | | ||||||||    
T  6261062 tagatacaatgtcac 6261048  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 538
Target Start/End: Original strand, 44148236 - 44148306
Alignment:
Q  464 atgaatgattaaaataaattattacattagagagaatgattgattaaaatagagataaaaataatgtcaccaaaa 538  Q
    ||||| |||||||||||||||||   ||| ||||||| ||| ||||| |||||||||| || |||||||||||||    
T  44148236 atgaacgattaaaataaattatt---tta-agagaataatttattaagatagagataagaacaatgtcaccaaaa 44148306  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 421 - 538
Target Start/End: Original strand, 44015394 - 44015512
Alignment:
Q  421 acattggtgagattagtgcatttgagataagagaaaatagtttatgaatgattaaaataaatta-ttacattagagagaatgattgattaaaatagagat 519  Q
    |||||||||| ||||||| |||| |||| ||| | |||  |  ||||||||||||||||||||| ||| || ||||| || |||||||||| | ||||||    
T  44015394 acattggtgacattagtgtattttagatgagaaagaatgatagatgaatgattaaaataaattatttagatgagagataaagattgattaagagagagat 44015493  T
Q  520 aaaaataatgtcaccaaaa 538  Q
    || || |||||||||||||    
T  44015494 aagaacaatgtcaccaaaa 44015512  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 486
Target Start/End: Original strand, 19473024 - 19473098
Alignment:
Q  412 gttttgatgacattggtgagattagtgcatttgagataagagaaaatagtttatgaatgattaaaataaattatt 486  Q
    ||||||||||||||||||| |||| || |||| |||  |||||||||  |  |||||||||||||||||||||||    
T  19473024 gttttgatgacattggtgatattaatgtattttagaggagagaaaatgatacatgaatgattaaaataaattatt 19473098  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 512
Target Start/End: Original strand, 1208719 - 1208763
Alignment:
Q  464 atgaatgattaaaataaattattacattagagagaatgattgattaaaa 512  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||    
T  1208719 atgaatgattaaaataaattat----ttagagagaatgattgattaaaa 1208763  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 510
Target Start/End: Original strand, 30643617 - 30643664
Alignment:
Q  464 atgaatgattaaaataaatta-ttacattagagagaatgattgattaa 510  Q
    ||||||||||||||||||||| ||| || |||||||||||||||||||    
T  30643617 atgaatgattaaaataaattatttagatgagagagaatgattgattaa 30643664  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 542
Target Start/End: Complemental strand, 53176905 - 53176826
Alignment:
Q  464 atgaatgattaaaataaatta-ttacattagagagaatgattgattaaaatagagataaaaataatgtcaccaaaaacta 542  Q
    ||||||||||||||||||||| ||| || ||||| ||||||||||||||| | |  || ||||||||||| |||| ||||    
T  53176905 atgaatgattaaaataaattatttagatgagagaaaatgattgattaaaagaaaagtagaaataatgtcatcaaatacta 53176826  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 351
Target Start/End: Original strand, 43466097 - 43466127
Alignment:
Q  321 gttgtctcaaaatgattgtacaaatatcatt 351  Q
    |||||||||||||||||||||||||||||||    
T  43466097 gttgtctcaaaatgattgtacaaatatcatt 43466127  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 9162105 - 9162069
Alignment:
Q  316 aaaatgttgtctcaaaatgattgtacaaatatcattt 352  Q
    |||| |||||| |||||||||||||||||||||||||    
T  9162105 aaaaagttgtcacaaaatgattgtacaaatatcattt 9162069  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 392 - 548
Target Start/End: Complemental strand, 8585840 - 8585683
Alignment:
Q  392 gtttcacttggatcacgtaggttttgatgacattggtgagattagtgcatttgagataagagaaaatagtttatgaatgattaaaataaatta-ttacat 490  Q
    ||||||||||| | || ||| ||||||||||||| |||| ||||||| |||| |||| | ||| |||  |  ||||||||||||||||||| | ||| ||    
T  8585840 gtttcacttgggtgacatagtttttgatgacattagtgacattagtgtattttagatgaaagagaatgatggatgaatgattaaaataaatgatttagat 8585741  T
Q  491 tagagagaatgattgattaaaatagagataaaaataatgtcaccaaaaactaatgtca 548  Q
     | ||||| |||| |||||| | |||||||  || ||||||||  ||||| |||||||    
T  8585740 gaaagagagtgatcgattaagagagagataggaacaatgtcacataaaaccaatgtca 8585683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 532
Target Start/End: Complemental strand, 26847244 - 26847137
Alignment:
Q  426 ggtgagattagtgcatttgagataagagaaaatagtttatgaatgattaaaataaattatt-acattagagagaatgattgattaaaatagagataaaaa 524  Q
    ||||| ||||||| |||| |||| ||||| |||  |  |||||||| |||||||||||||| | || ||||| ||| ||||||||||| ||||||| |||    
T  26847244 ggtgacattagtgtattttagatgagagagaatgatagatgaatgagtaaaataaattatttagataagagataataattgattaaaagagagatataaa 26847145  T
Q  525 taatgtca 532  Q
     |||||||    
T  26847144 caatgtca 26847137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 15722535 - 15722571
Alignment:
Q  316 aaaatgttgtctcaaaatgattgtacaaatatcattt 352  Q
    |||| |||||| |||||||||||||||||||||||||    
T  15722535 aaaaagttgtcacaaaatgattgtacaaatatcattt 15722571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 464 - 564
Target Start/End: Original strand, 40204752 - 40204853
Alignment:
Q  464 atgaatgattaaaataaattatt-acattagagagaatgattgattaaaatagagataaaaataatgtcaccaaaaactaatgtcatttaaatgcaatct 562  Q
    |||||| |||||||||||||||| |  | | ||||||| ||||||||| |  |||||| ||| ||||||| ||||| ||||||||| | |||||||||||    
T  40204752 atgaattattaaaataaattatttaggtgaaagagaataattgattaagagggagatataaacaatgtcatcaaaatctaatgtcactcaaatgcaatct 40204851  T
Q  563 gt 564  Q
    ||    
T  40204852 gt 40204853  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 486
Target Start/End: Original strand, 38529886 - 38529927
Alignment:
Q  445 agataagagaaaatagtttatgaatgattaaaataaattatt 486  Q
    |||| ||||| |||| ||||||||||||||||||||||||||    
T  38529886 agatgagagataataatttatgaatgattaaaataaattatt 38529927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 18373886 - 18373850
Alignment:
Q  316 aaaatgttgtctcaaaatgattgtacaaatatcattt 352  Q
    |||||||||||  ||||||||||||||||||||||||    
T  18373886 aaaatgttgtcataaaatgattgtacaaatatcattt 18373850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 510
Target Start/End: Original strand, 33922815 - 33922934
Alignment:
Q  392 gtttcacttggatcacgtaggttttgatgacattggtgagattagtgcatttgagataagagaaaatagtttatgaatgattaaaataaattat-tacat 490  Q
    ||||||||||  | || ||| |||||||||||||| ||| ||||||| |||  |||| ||||| |||  |  ||||||||||||||||||| || || ||    
T  33922815 gtttcacttgagtgacatagtttttgatgacattgatgatattagtgtattctagatgagagagaatgataaatgaatgattaaaataaataatgtagat 33922914  T
Q  491 tagagagaatgattgattaa 510  Q
     ||||||| |||||||||||    
T  33922915 gagagagagtgattgattaa 33922934  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 352
Target Start/End: Original strand, 16836134 - 16836172
Alignment:
Q  314 agaaaatgttgtctcaaaatgattgtacaaatatcattt 352  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  16836134 agaaaaagttgtcacaaaatgattgtacaaatatcattt 16836172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 37669437 - 37669401
Alignment:
Q  316 aaaatgttgtctcaaaatgattgtacaaatatcattt 352  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  37669437 aaaaagttgtatcaaaatgattgtacaaatatcattt 37669401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 52715017 - 52714981
Alignment:
Q  316 aaaatgttgtctcaaaatgattgtacaaatatcattt 352  Q
    |||| |||||| |||||||||||||||||||||||||    
T  52715017 aaaaagttgtcacaaaatgattgtacaaatatcattt 52714981  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 22891 - 22927
Alignment:
Q  321 gttgtctcaaaatgattgtacaaatatcatttttata 357  Q
    |||||| |||||||||||| |||||||||||||||||    
T  22891 gttgtcacaaaatgattgttcaaatatcatttttata 22927  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 35074122 - 35074158
Alignment:
Q  316 aaaatgttgtctcaaaatgattgtacaaatatcattt 352  Q
    |||| |||||| |||||||||||||||||||||||||    
T  35074122 aaaaagttgtcccaaaatgattgtacaaatatcattt 35074158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 527
Target Start/End: Original strand, 39488506 - 39488570
Alignment:
Q  464 atgaatgattaaaataaattatt-acattagagagaatgattgattaaaatagagataaaaataa 527  Q
    |||||| |||||||||||||||| | |  ||||| ||||||||||||| ||||||||| ||||||    
T  39488506 atgaataattaaaataaattatttaaaaaagagaaaatgattgattaagatagagatagaaataa 39488570  T

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