View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11703_high_17 (Length: 557)

Name: NF11703_high_17
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11703_high_17
NF11703_high_17
[»] chr4 (14 HSPs)
chr4 (1-540)||(21833535-21834092)
chr4 (256-377)||(1755035-1755156)
chr4 (272-377)||(641483-641588)
chr4 (264-405)||(3438082-3438223)
chr4 (208-487)||(55908104-55908380)
chr4 (28-153)||(7308230-7308355)
chr4 (221-405)||(1600930-1601114)
chr4 (107-155)||(1601177-1601225)
chr4 (221-333)||(53761252-53761364)
chr4 (22-88)||(53761062-53761128)
chr4 (106-155)||(371298-371347)
chr4 (264-377)||(547470-547583)
chr4 (418-503)||(53761371-53761456)
chr4 (101-153)||(8183616-8183668)
[»] chr5 (5 HSPs)
chr5 (206-538)||(28532101-28532439)
chr5 (221-468)||(41888937-41889187)
chr5 (256-377)||(32268029-32268150)
chr5 (263-368)||(41900966-41901071)
chr5 (107-155)||(41900804-41900852)
[»] chr7 (3 HSPs)
chr7 (203-503)||(10615018-10615318)
chr7 (221-431)||(10169525-10169735)
chr7 (221-431)||(10177050-10177260)
[»] chr6 (5 HSPs)
chr6 (203-486)||(6588700-6588986)
chr6 (280-491)||(6416403-6416614)
chr6 (422-486)||(8913659-8913723)
chr6 (10-59)||(6588519-6588568)
chr6 (418-486)||(6594189-6594257)
[»] chr3 (3 HSPs)
chr3 (221-503)||(51763835-51764117)
chr3 (281-503)||(13470184-13470406)
chr3 (299-440)||(514192-514333)
[»] chr1 (3 HSPs)
chr1 (203-377)||(19467876-19468050)
chr1 (280-377)||(17352198-17352295)
chr1 (111-153)||(7554870-7554912)
[»] chr2 (1 HSPs)
chr2 (208-487)||(1037040-1037316)
[»] chr8 (4 HSPs)
chr8 (21-74)||(17635904-17635957)
chr8 (21-94)||(18318891-18318964)
chr8 (21-155)||(18314885-18315019)
chr8 (263-323)||(27922699-27922759)


Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Original strand, 21833535 - 21834092
Alignment:
Q  1 tctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtgatcaaataagaggaa 100  Q
    |||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||  ||     
T  21833535 tctggctttcccataaacaatcaatctcttttccacttgctaaagaattgtaagcttcttgaagaggtcatcatgtttgattgtgatcaaataagcagag 21833634  T
Q  101 caggcattgcttcagctctcctcgagagaccaacattgagttctttatccttttctagtagtagcgcttatgtcataccagacttcgctgcttcatattt 200  Q
     ||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||  ||||| ||| |||||| || |||||| || |||    
T  21833635 aaggcattgcttcagctctccgtgagagaccaacattgagttctttatccttttctggtagtagcagttatggcatgccagacatcactgctttatgttt 21833734  T
Q  201 ------------------atattttattggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactc 282  Q
                      ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21833735 tattggcttcactgcttcatattttattggctcattagtgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatcttggatgagttactc 21833834  T
Q  283 tactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21833835 tactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaaatgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtc 21833934  T
Q  383 atggtgtccaacatttggatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaacct 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21833935 atggtgtccaacatttggatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaacct 21834034  T
Q  483 tagtggttgtgataagctcactgaacgttctttgtttacacttgttaagaactgtcat 540  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21834035 tagtggttgtgataagctcactgaacgtgctttgtttacacttgttaagaactgtcat 21834092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 256 - 377
Target Start/End: Complemental strand, 1755156 - 1755035
Alignment:
Q  256 tctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatg 355  Q
    |||||| |||||||||||||| | || ||||||||||||| | || |||||||||| | ||||||||| ||| || ||||||||||||||||||||||||    
T  1755156 tctttgaatatctcggatgagctgctgtactctattgcaatgaaaagtcttcctttgaagaggcttgtgcttggacattgcaccggctatagttatgatg 1755057  T
Q  356 gaatcttttgtttgttatccaa 377  Q
    |||||   ||||||||||||||    
T  1755056 gaatccgatgtttgttatccaa 1755035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 272 - 377
Target Start/End: Complemental strand, 641588 - 641483
Alignment:
Q  272 atgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgtt 371  Q
    ||||||| |||| ||||||||||| | |||| |||||||| ||||| ||||||||  | |||||||||||||||| ||||||||||||||| ||||||||    
T  641588 atgagtttctctcctctattgcaatgaaaggccttcctttgacgagacttgtcctctgcaattgcaccggctatacttatgatggaatcttgtgtttgtt 641489  T
Q  372 atccaa 377  Q
    ||||||    
T  641488 atccaa 641483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 405
Target Start/End: Original strand, 3438082 - 3438223
Alignment:
Q  264 tatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttt 363  Q
    |||| ||||||| ||||| | |||||||||||  | |||||||||||| |  ||||||||||| |  |||||||||||||||||||||| || |||||||    
T  3438082 tatcccggatgaattactttcctctattgcaattggaggtcttcctttgagaaggcttgtcctccacaattgcaccggctatagttatgctgaaatcttt 3438181  T
Q  364 tgtttgttatccaaaggtcatggtgtccaacatttggatctt 405  Q
    | | ||||||||||  ||||  || | |||||||||||||||    
T  3438182 tctctgttatccaagtgtcaatgtatacaacatttggatctt 3438223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 208 - 487
Target Start/End: Original strand, 55908104 - 55908380
Alignment:
Q  208 attggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttc 307  Q
    |||||||| ||  |||||||||| || || |||||||||| ||||   ||||||   ||||||||||| || || |  |||||||||| || ||||||||    
T  55908104 attggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcggatgaattgcttttttctattgcaatgggaggtcttc 55908203  T
Q  308 ctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttga 407  Q
    |||| |  || |||||||| | ||||||||||||||||| ||||| |||||| |  | ||||||||||||  |||   || | ||||||||||||||| |    
T  55908204 ctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaagtgtc---gtatacaacatttggatcttca 55908300  T
Q  408 agataacatgtttctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagtg 487  Q
    | ||  || |||| ||||||||||  |||| |   |||||| ||  ||||||||||||||| | || |||||||||||||    
T  55908301 aaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtg 55908380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 7308355 - 7308230
Alignment:
Q  28 cttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtgatcaaataagaggaacaggcattgcttcagctctcctcgaga 127  Q
    |||||||||||||| ||||||||||||||||| ||||| |||||||| || || ||| ||||| |||      ||||||||||| | ||||| |  ||||    
T  7308355 cttttccacttgtttaagaattgtaagcttctggaagaggccatcatattagactgtcatcaactaaccaacgcaggcattgctactgctctacatgaga 7308256  T
Q  128 gaccaacattgagttctttatccttt 153  Q
    ||||||||||| | ||||||||||||    
T  7308255 gaccaacattgcgctctttatccttt 7308230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 405
Target Start/End: Complemental strand, 1601114 - 1600930
Alignment:
Q  221 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 320  Q
    ||||||||||||||||||||||||||   |||   | || |  |||||||||| |||| |||| ||||||||||| ||||  || |||||| | ||||||    
T  1601114 tgagtttgaagggtttgacttgtcttgaattgtcctattggcgtatctcggatcagttgctctcctctattgcaaaggaaaatcctcctttgaggaggct 1601015  T
Q  321 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatctt 405  Q
    || |||   | ||| ||| ||||||||||||  |||| |  || |||||||||||||  ||||  || |||||||||||| ||||    
T  1601014 tgacctcgcatatttcactggctatagttatattggagtagttagtttgttatccaagtgtcaacgtatccaacatttggttctt 1600930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 1601225 - 1601177
Alignment:
Q  107 ttgcttcagctctcctcgagagaccaacattgagttctttatccttttc 155  Q
    ||||||| |||||||  ||||||||||||||||| ||||||||||||||    
T  1601225 ttgcttctgctctccgtgagagaccaacattgaggtctttatccttttc 1601177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 333
Target Start/End: Original strand, 53761252 - 53761364
Alignment:
Q  221 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 320  Q
    ||||||||||||||||||||| ||||| |||||    |||    || || ||| |||| |||||||||||||||| |||| |||||||||| || || ||    
T  53761252 tgagtttgaagggtttgacttctcttaatttgcagcatttaggaatttcagataagttgctctactctattgcaaaggaatgtcttcctttgacaagtct 53761351  T
Q  321 tgtccttcgaaat 333  Q
    |||||||| ||||    
T  53761352 tgtccttcaaaat 53761364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 53761062 - 53761128
Alignment:
Q  22 caatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtgatc 88  Q
    ||||| |||||||||||||| ||||||||||| |||||| |||| | |||| ||||| | |||||||    
T  53761062 caatcacttttccacttgttgaagaattgtaatcttcttcaagaggtcatcttgtttaactgtgatc 53761128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 371347 - 371298
Alignment:
Q  106 attgcttcagctctcctcgagagaccaacattgagttctttatccttttc 155  Q
    |||||||| ||||||||  |||||||||||||||  ||||||||||||||    
T  371347 attgcttctgctctccttcagagaccaacattgacctctttatccttttc 371298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 377
Target Start/End: Complemental strand, 547583 - 547470
Alignment:
Q  264 tatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttt 363  Q
    ||||||||||  ||| |||| ||||||||||| ||||| | ||||||| |  | ||||||||| | ||||||   |||||||||||||| |||||| | |    
T  547583 tatctcggatatgttgctctcctctattgcaatggaagctattcctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctggaatatct 547484  T
Q  364 tgtttgttatccaa 377  Q
    ||||| || |||||    
T  547483 tgttttttgtccaa 547470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 503
Target Start/End: Original strand, 53761371 - 53761456
Alignment:
Q  418 tttctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagtggttgtgataagctcac 503  Q
    ||||||||  |||||||||||||  | |||| ||   |||||||||||||| | ||||||||||||||| ||||| ||||| ||||    
T  53761371 tttctgaacaatcaacatgttgtaaatttgtctttgcttcttggtgatttggtgtccataaaccttagtcgttgttataagatcac 53761456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 8183616 - 8183668
Alignment:
Q  101 caggcattgcttcagctctcctcgagagaccaacattgagttctttatccttt 153  Q
    ||||||||||||| ||  | || ||||||||||||||||| ||||||||||||    
T  8183616 caggcattgcttctgcattacttgagagaccaacattgaggtctttatccttt 8183668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 206 - 538
Target Start/End: Complemental strand, 28532439 - 28532101
Alignment:
Q  206 ttattggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtct 305  Q
    |||||| ||||||  ||||||| |||||||||||||||||| |||||  || |||  |||| || |||||||| |||||| |||||||||||| ||||||    
T  28532439 ttattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaaggggaggtct 28532340  T
Q  306 tcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaa------aggtcatggtgtccaacatttg 399  Q
    |||||| |  | |||||||||   |||| ||   |||||||||||||| ||| |||||||||||||||||||      | |||| ||| ||| |||||||    
T  28532339 tcctttgataaagcttgtcctaaaaaatcgctggggctatagttatgacggactcttttgtttgttatccaagtgtcgacgtcaaggtttccgacatttg 28532240  T
Q  400 gatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagtggttgtgataagc 499  Q
     || ||| |  ||  | |||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| ||||| |||||||||  |||||||||||    
T  28532239 tatattggacttagtaagtttctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtccatcaaccttagtaattgtgataagc 28532140  T
Q  500 tcactgaacgttctttgtttacacttgttaagaactgtc 538  Q
    | || |||   ||||||||| |||| | || ||||||||    
T  28532139 taacagaatcatctttgtttgcactcgctaggaactgtc 28532101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 221 - 468
Target Start/End: Original strand, 41888937 - 41889187
Alignment:
Q  221 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggc- 319  Q
    |||||||||||   ||||||||||||  ||||  ||||||| ||||||| |||||| | || | ||||||||||| | ||||| ||| ||| || |||      
T  41888937 tgagtttgaagtacttgacttgtcttgatttgttttctttgaatatctccgatgagatgctttcctctattgcaatgcaaggttttcttttgactaggtg 41889036  T
Q  320 -ttgtcctt-cgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttgaagataacatg 417  Q
     || ||| | | |||||||||||||| |||||||| |||||||||||||||  |||||||  || |   | |||||| |||||||||| || |||   |     
T  41889037 gttctccctacaaaattgcaccggctttagttatgctggaatcttttgtttactatccaagtgtgaacatatccaacttttggatcttcaaaatattgtt 41889136  T
Q  418 tttctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttg 468  Q
    ||||||||| || ||||||||||  |||||| |||||||||||||||||||    
T  41889137 tttctgaatcataaacatgttgtggagttgtcttcatttcttggtgatttg 41889187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 377
Target Start/End: Complemental strand, 32268150 - 32268029
Alignment:
Q  256 tctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatg 355  Q
    |||||| ||||||| |||||||| |||| ||||||||||    || |||||||||| ||||||||||| || | | |||||||||||||||| |||  ||    
T  32268150 tctttgaatatctcagatgagttgctctcctctattgcataccaatgtcttcctttgacgaggcttgttctccaagattgcaccggctatagctattctg 32268051  T
Q  356 gaatcttttgtttgttatccaa 377  Q
    ||||| ||| |||  |||||||    
T  32268050 gaatcctttctttactatccaa 32268029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 368
Target Start/End: Original strand, 41900966 - 41901071
Alignment:
Q  263 atatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatctt 362  Q
    ||||||| |||| ||| |||  |||||||||||   ||||||| ||||| || |||||||| || | |||||||||||| |||||||||  ||||||  |    
T  41900966 atatctcagatgtgtttctcatctctattgcaatccaaggtctacctttgactaggcttgttctccaaaattgcaccggttatagttattctggaattat 41901065  T
Q  363 ttgttt 368  Q
    ||||||    
T  41901066 ttgttt 41901071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 41900804 - 41900852
Alignment:
Q  107 ttgcttcagctctcctcgagagaccaacattgagttctttatccttttc 155  Q
    ||||||| ||||||| | |||||||||||||||| |||||||| |||||    
T  41900804 ttgcttctgctctccgccagagaccaacattgaggtctttatcattttc 41900852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 203 - 503
Target Start/End: Complemental strand, 10615318 - 10615018
Alignment:
Q  203 attttattggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaagg 302  Q
    ||||||||| ||||||  ||||||||||||| ||||||||||||  |||||  | | || |||||||  || | ||  | ||||||||||||||||  ||    
T  10615318 attttattgactcattggtgagtttgaagggcttgacttgtcttgatttgcagtttatgaatatctcaaataacttgttttactctattgcaagggtggg 10615219  T
Q  303 tcttcctttaacgaggcttgtccttcgaaattgcaccggcta---tagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttg 399  Q
    ||||||||| |||||| ||  ||| ||| ||||   |||| |   |||||||| |||||||| |||||| ||||||||  |||| ||  |||||||||||    
T  10615218 tcttcctttgacgaggtttaccctccgacattgtttcggccaccatagttatgctggaatctattgtttattatccaagtgtcaaggcttccaacatttg 10615119  T
Q  400 gatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagtggttgtgataagc 499  Q
    |||||||||  |     ||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| |||||| |||||    
T  10615118 gatcttgaacttcc---gtttctgaatgatcaacatgttgtccaattgtcttcatttcttggtgatttgatgtccataaaccttagttgttgtgttaagc 10615022  T
Q  500 tcac 503  Q
    ||||    
T  10615021 tcac 10615018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 221 - 431
Target Start/End: Original strand, 10169525 - 10169735
Alignment:
Q  221 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 320  Q
    ||||||||||||||||||||| ||||  |||| | ||| || ||||||| |||||  | |||||||||||||| ||||||||||| ||||| ||||||||    
T  10169525 tgagtttgaagggtttgacttctctttctttgagatctctggatatctctgatgaaatgctctactctattgcgagggaaggtctacctttgacgaggct 10169624  T
Q  321 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttgaagataacatgttt 420  Q
    || |||  || |||||   | ||| || |||| ||||||||||||||||| ||| ||  |||  ||| | |||||  ||||||||||| ||  ||| ||     
T  10169625 tgccctcagatattgcttggactaaagctatgctggaatcttttgtttgtcatctaagtgtcgaggtttgcaacacatggatcttgaacatgccattttc 10169724  T
Q  421 ctgaatgatca 431  Q
    |||||||||||    
T  10169725 ctgaatgatca 10169735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 221 - 431
Target Start/End: Original strand, 10177050 - 10177260
Alignment:
Q  221 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 320  Q
    ||||||||||||||||||||| ||||  |||| | ||| || ||||||| |||||  | |||||||||||||| ||||||||||| ||||| ||||||||    
T  10177050 tgagtttgaagggtttgacttctctttctttgagatctctggatatctctgatgaaatgctctactctattgcgagggaaggtctacctttgacgaggct 10177149  T
Q  321 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttgaagataacatgttt 420  Q
    || |||  || |||||   | ||| || |||| ||||||||||||||||| ||| ||  |||  ||| | |||||  ||||||||||| ||  ||| ||     
T  10177150 tgccctcagatattgcttggactaaagctatgctggaatcttttgtttgtcatctaagtgtcgaggtttgcaacacatggatcttgaacatgccattttc 10177249  T
Q  421 ctgaatgatca 431  Q
    |||||||||||    
T  10177250 ctgaatgatca 10177260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 203 - 486
Target Start/End: Original strand, 6588700 - 6588986
Alignment:
Q  203 attttattggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaagg 302  Q
    |||| |||| ||||||  ||||||||||| |||||||||||||| |||||  | ||||| ||||||| |||||||| |||||| ||||||||||| || |    
T  6588700 atttaattgactcattggtgagtttgaagagtttgacttgtcttggtttgtctgctttgaatatctccgatgagttgctctacactattgcaaggaaacg 6588799  T
Q  303 tcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatg---gtgtccaacatttg 399  Q
    ||||||||| || || ||||| ||   | ||||  | |||  |  |||| ||||| |||||| |||||||||||   |||||    || |||||||||||    
T  6588800 tcttcctttgacaagacttgtactcaaatattgttctggccgttattataatggactcttttatttgttatccatgtgtcataaaagtttccaacatttg 6588899  T
Q  400 gatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagt 486  Q
    |||||||||||||| | ||||||||||||||||||||||||| | |||| ||| ||||||||||||||| | ||| |||||||||||    
T  6588900 gatcttgaagataataggtttctgaatgatcaacatgttgtcgaattgtcttcctttcttggtgatttggtgtccgtaaaccttagt 6588986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 491
Target Start/End: Complemental strand, 6416614 - 6416403
Alignment:
Q  280 ctctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggct---atagttatgatggaatcttttgtttgttatcca 376  Q
    ||||||| |||||||||||||||||||||||| |||||| ||  ||| ||| ||||    |||    |||||| || |||||| ||| ||||||||||||    
T  6416614 ctctactgtattgcaagggaaggtcttcctttgacgaggtttaccctccgacattgttttggcccccatagttctgctggaatatttcgtttgttatcca 6416515  T
Q  377 aaggtcatggtgtccaacatttggatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccat 476  Q
    |  |||| ||  ||||||||||| ||||||||  |     |||||| |||||||||||||||||||| |||| | | |||||| ||| |||||| |||||    
T  6416514 agtgtcaaggcatccaacatttgaatcttgaactttc---gtttcttaatgatcaacatgttgtccaattgtctccgtttcttagtggtttgatgtccat 6416418  T
Q  477 aaaccttagtggttg 491  Q
    |||||||||| ||||    
T  6416417 aaaccttagttgttg 6416403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 486
Target Start/End: Original strand, 8913659 - 8913723
Alignment:
Q  422 tgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagt 486  Q
    |||||||||||||||||||| |||||| ||  ||||||||| ||||| | || ||||||||||||    
T  8913659 tgaatgatcaacatgttgtcaagttgtctttgtttcttggtaatttggtgtctataaaccttagt 8913723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 6588519 - 6588568
Alignment:
Q  10 cccataaacagtcaatctcttttccacttgttaaagaattgtaagcttct 59  Q
    ||||| |||| |||||| |||||||||||||| || ||||||||||||||    
T  6588519 cccatcaacaatcaatcgcttttccacttgttcaacaattgtaagcttct 6588568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 486
Target Start/End: Original strand, 6594189 - 6594257
Alignment:
Q  418 tttctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagt 486  Q
    |||||||||||||||||||||| | |||||| ||  ||||||| || |||||  ||||| |||||||||    
T  6594189 tttctgaatgatcaacatgttgccgagttgtctttgtttcttgctggtttgaagtccattaaccttagt 6594257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 221 - 503
Target Start/End: Original strand, 51763835 - 51764117
Alignment:
Q  221 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 320  Q
    ||||||||||||||||||||| ||||  ||||     |||| | ||||| |||||||| |||||||| ||||||||||||||||||| ||| |  |||||    
T  51763835 tgagtttgaagggtttgacttctcttgatttgaagcgtttgaaaatctctgatgagttgctctactcgattgcaagggaaggtcttcttttgaaaaggct 51763934  T
Q  321 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttgaagataacatgttt 420  Q
    |||||||| || |||||| ||||||||||||| ||||||| |||||||| |||||||  ||||  || |  |||||||||||||| |||||      |||    
T  51763935 tgtccttcaaatttgcacgggctatagttatgctggaatcatttgtttggtatccaactgtcaacgtttgaaacatttggatcttcaagatgctggtttt 51764034  T
Q  421 ctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagtggttgtgataagctcac 503  Q
    |||||||||  |||||||||  | |||| ||  |||||| || ||||| | |||||||||||||||||||||  |||||||||    
T  51764035 ctgaatgatatacatgttgtaaatttgtctttgtttcttagtaatttggtgtccataaaccttagtggttgtcctaagctcac 51764117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 281 - 503
Target Start/End: Original strand, 13470184 - 13470406
Alignment:
Q  281 tctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggct---atagttatgatggaatcttttgtttgttatccaa 377  Q
    |||||| |||||||||||||||||||||||| |||||| ||| ||| ||| ||||    |||    ||||||||| |||||| ||| |||||||||||||    
T  13470184 tctactgtattgcaagggaaggtcttcctttgacgaggtttgccctccgacattgttttggcccccatagttatgctggaatatttcgtttgttatccaa 13470283  T
Q  378 aggtcatggtgtccaacatttggatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccata 477  Q
      |||| ||  |||||||||| ||||||||   |    ||||||||||||||||||||||| |||| |||| ||| |||||| ||| |||||| ||||||    
T  13470284 gtgtcaaggcatccaacatttagatcttgagcttt---tgtttctgaatgatcaacatgttctccaattgtcttcgtttcttagtggtttgatgtccata 13470380  T
Q  478 aaccttagtggttgtgataagctcac 503  Q
    ||||||||| |||||  |||||||||    
T  13470381 aaccttagttgttgtcttaagctcac 13470406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 440
Target Start/End: Original strand, 514192 - 514333
Alignment:
Q  299 aaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacattt 398  Q
    ||||||||||||||| ||| ||||| || || | ||| ||||||||  | |||||||||||||||| ||||||||||||| || |  |  | ||||||||    
T  514192 aaggtcttcctttaaggagacttgtgctccgtagttgtaccggctacggctatgatggaatcttttctttgttatccaaatgtaaatggatacaacattt 514291  T
Q  399 ggatcttgaagataacatgtttctgaatgatcaacatgttgt 440  Q
    | ||||| |||||  | | || || |||||||||||||||||    
T  514292 gaatcttcaagatgcccttttcctcaatgatcaacatgttgt 514333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 203 - 377
Target Start/End: Original strand, 19467876 - 19468050
Alignment:
Q  203 attttattggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaagg 302  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||| || | | | | || ||||||| |||||  | ||||||||||||||| |||||||    
T  19467876 attttattgactcattgctgagtttgaagggtttgacttctcttacttggtggtttctgaatatctctgatgaaatgctctactctattgcacgggaagg 19467975  T
Q  303 tcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaa 377  Q
     || ||||| ||||||||||||||   | |||||   ||| |||| |||| ||||||||||||||||||||||||    
T  19467976 gctacctttgacgaggcttgtcctcaaatattgctttggccatagctatgctggaatcttttgtttgttatccaa 19468050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 377
Target Start/End: Complemental strand, 17352295 - 17352198
Alignment:
Q  280 ctctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaa 377  Q
    |||| ||||||||||| ||| ||| ||||||| | ||| |||||||||| | ||| ||| ||||| ||||||| |||||  |||| ||||||||||||    
T  17352295 ctctcctctattgcaaaggagggttttcctttcaggagacttgtccttcaatattccactggctacagttatgctggaactttttctttgttatccaa 17352198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 7554912 - 7554870
Alignment:
Q  111 ttcagctctcctcgagagaccaacattgagttctttatccttt 153  Q
    |||||||||||  ||||||||||||||||| ||||||||||||    
T  7554912 ttcagctctccatgagagaccaacattgaggtctttatccttt 7554870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 487
Target Start/End: Original strand, 1037040 - 1037316
Alignment:
Q  208 attggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttc 307  Q
    |||||||| ||  |||||||||| || || |||||||||| ||||   ||||||   || |||||||| || || |  |||||||||| || ||||||||    
T  1037040 attggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcatctttgcgcatttcggatgaattgcttttttctattgcaatgggaggtcttc 1037139  T
Q  308 ctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttga 407  Q
    |||| |  || |||||||| | |||||||||| |||||| ||||| |||||| |  | ||||||||||||  |||   || | ||||||||||||||| |    
T  1037140 ctttgagaagacttgtcctccaaaattgcaccagctataattatgttggaatatactctttgttatccaagtgtc---gtatacaacatttggatcttca 1037236  T
Q  408 agataacatgtttctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagtg 487  Q
    | ||  || |||| ||||||||||  |||| |   |||||| ||  ||||||||||||||| | || |||||||||||||    
T  1037237 aaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtg 1037316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 17635904 - 17635957
Alignment:
Q  21 tcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcat 74  Q
    |||||||||| || ||||||| |||||||| ||| |||||||||||||||||||    
T  17635904 tcaatctcttctcaacttgttcaagaattggaagtttcttgaagaagccatcat 17635957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 18318891 - 18318964
Alignment:
Q  21 tcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtgatcaaataa 94  Q
    |||||| ||| |||||||||| ||||| || |||||||| ||||| ||||||||  |||| |||||||||||||    
T  18318891 tcaatcgcttatccacttgttcaagaactggaagcttctcgaagaggccatcatacttgactgtgatcaaataa 18318964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 18314885 - 18315019
Alignment:
Q  21 tcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtgatcaaataagaggaacaggcattgcttcagctctc 120  Q
    |||||| |||||||||||||| ||||| ||||||||||| |||||  | ||||| ||| | ||| |||||||||      | || |||||||  ||||||    
T  18314885 tcaatcgcttttccacttgttcaagaactgtaagcttctcgaagagacaatcatattttactgtcatcaaataaccaacgcgggtattgcttttgctctc 18314984  T
Q  121 ctcgagagaccaacattgagttctttatccttttc 155  Q
    |  ||||||||||| ||||| ||||||||| ||||    
T  18314985 cgtgagagaccaactttgaggtctttatccatttc 18315019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 27922759 - 27922699
Alignment:
Q  263 atatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgt 323  Q
    |||||||||||||||| |||| ||||||||| |  ||| |||| ||||| |||||||||||    
T  27922759 atatctcggatgagttgctctcctctattgccaccgaacgtctacctttgacgaggcttgt 27922699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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