View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_high_2 (Length: 802)
Name: NF11703_high_2
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 257 - 793
Target Start/End: Original strand, 4537186 - 4537729
Alignment:
| Q |
257 |
tatcacatgttttggtataggcagggtcaccaaggcaatgtaagacttaaaagtaacaaatcatgaagtggcaatttgttaagtaccaaaagatgagatt |
356 |
Q |
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| T |
4537186 |
tatcacatgttttggtatgggtagggtcaccaaggcaatgtaagacttaaaagtaacaaatcatgaagtggcaatttgttaagtaccaaaagatgagatt |
4537285 |
T |
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| Q |
357 |
gtaaataagggactgtccttacttttggacgatcctcg-----taggaactgtataaaaatttattt-gcttatattaatcatgattttagtatggctag |
450 |
Q |
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| T |
4537286 |
gtaaataagggattgtccttacttttggacgacccttgatttgtaggaaccgtataaaaattgattttgcttatattaatcatgattttagtatggctag |
4537385 |
T |
|
| Q |
451 |
acaatcccttcctttaagactcaagtagttgttacctttgaaataattctaattgtttgattattaagaaccaaaatttattataacttttaatctcgat |
550 |
Q |
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| T |
4537386 |
acaatccctttctttaagactcaagtagttgttacctttgaaataattctaaatgtttgattattaagaatcaaaatttattataacttttaatctcgat |
4537485 |
T |
|
| Q |
551 |
tttattaaattataagtaattttgatatggattcaagaaattacgctatgttatatatcaaacttgttatatgact-aaaacattcatacataaattcat |
649 |
Q |
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| T |
4537486 |
tttattaaattataagttattttgatatggattcaagaaattacgttatgttataaatcaaacttgttatatgactgcaaacattcatacataaattcat |
4537585 |
T |
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| Q |
650 |
ttcattctcaaactcaactttaactatcaattttacaaaacagagtttacaaaattacgattaacaaatattcgtccaataaacactaaatttcttttac |
749 |
Q |
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| T |
4537586 |
ttcattctcaaactcaactttaactatcaattttacaaaacagagtttacaaaattacgattaacaaatattcgtccaataaacactaaatttcttttac |
4537685 |
T |
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| Q |
750 |
tcaatcaccaaaatctataaactcgggtacttcccatcctatgc |
793 |
Q |
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| T |
4537686 |
tcaatcaccaaaatctatcaactcaggtacttcccatcctatgc |
4537729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 4536620 - 4536859
Alignment:
| Q |
18 |
actagtgttatgcccccacaaccatatcttgtttatggtacttgtaccctactattaatgagtgggttcagagtcagattaagatatgttaccccaattg |
117 |
Q |
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| T |
4536620 |
actagtgttatgcccccacaaccatatcttgtttatggtacttgtaccctactattaatgagtgggttcagagtcagattaagatatgttaccccaattg |
4536719 |
T |
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| Q |
118 |
aattgccctcacttatgcataggcattattgtgtgatctcttgcaaacatacggtcacaactcactactcatgtgctagaaaaaagtaggagtaacaaat |
217 |
Q |
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| T |
4536720 |
aattgccctcacttatccataggcattattgtgtgatctcttgcaaacatacggtcacaactcactactcatgtactagaaaaaaataggagtaacaaat |
4536819 |
T |
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| Q |
218 |
cta------catttaagccttagatttggaaatattacaa |
251 |
Q |
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| T |
4536820 |
gtacaaaatcatttaagccttagatttggaaatattacaa |
4536859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 675 - 725
Target Start/End: Complemental strand, 33648774 - 33648724
Alignment:
| Q |
675 |
atcaattttacaaaacagagtttacaaaattacgattaacaaatattcgtc |
725 |
Q |
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| T |
33648774 |
atcaattttacaaaacagaatttacaaaatcacgattaacaaatgttcgtc |
33648724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 303 - 502
Target Start/End: Original strand, 52084050 - 52084255
Alignment:
| Q |
303 |
ttaaaagtaacaaatcatgaagtggcaatttgttaagtaccaaaagatgagattgtaaataaggga----ctgtccttacttttggacgatcctcg--ta |
396 |
Q |
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| T |
52084050 |
ttaagagtaacaaatcatgaagaggcaatttgttatgtaccaaaagatgagattgtaaataagggattgtctgaccttacttttggacgacccttgattt |
52084149 |
T |
|
| Q |
397 |
g--gaactgtataaaaattta-tttgcttatattaatcatgattttagtatggctagacaatcccttcctttaagactcaagtagttgttacctttgaaa |
493 |
Q |
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| T |
52084150 |
gtagaaccg--caaaaattgattttgcttatacgaatcatgattttagcatggctagacaat-cctttctttaagactcaagtcattgttacctttgaaa |
52084246 |
T |
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| Q |
494 |
taattctaa |
502 |
Q |
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||||||||| |
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| T |
52084247 |
taattctaa |
52084255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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