View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11703_high_20 (Length: 550)
Name: NF11703_high_20
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_20 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 493; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 19 - 543
Target Start/End: Complemental strand, 198076 - 197552
Alignment:
| Q |
19 |
cagtatgttccttctagttttgctgaaaagcatctgacgctaaaggttccgttcaagctccaaaattctcaaggaaagcagtgggaagtttattgtgtat |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
198076 |
cagtatgttccttctatttttgctgaaaagtatctgacgctaaaggttccgttcaagctccaaaattctcaaggaaagcagtgggaagtttattgtgtat |
197977 |
T |
|
| Q |
119 |
tgcataacaaaggaaattcgcaaatgcgaataaccggtggattcggtaaatttgcaagggaaaacaatctactagagggagttacatatgtgtttgagct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
197976 |
tgcataacaaaggaaattcgcaaatgcgaataaccggtggattcggtaaatttgcaagggaaaacaatctactagagggagttacatatgtgtttgagct |
197877 |
T |
|
| Q |
219 |
gatcaagagaaagcctgttgttgtgctacaagttacagcgatttgcacggtttaaaaatctttcacatttgtctattcatcaattctaatttctttcaca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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|
| T |
197876 |
gatcaagagaaagcctgttgttgtgctacaagttacagcgatttgcacggtttaaaaatctttcacatttgtttattcatcaattctaatttcttttaca |
197777 |
T |
|
| Q |
319 |
gttttttcttttaatgtctgaactgttggtgaacttgatgcataaagtgataatagttattgcttattgcaatgcagcctccacagggaaggtctgtcca |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
197776 |
gttttttcttttaatgtctgaactgttggtgaacttgatgcataaagtgataatagttattgcttattgcaatgcagcctccacagggaaggtctgtcca |
197677 |
T |
|
| Q |
419 |
gtcaatgacagaaaaggaagtaagggaattcaaacatttcaggaaggccatacttccctcgcccattcatgacaaagagatcgtaagtttccctttccgt |
518 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
197676 |
gtcaatgacagaaaaggaagtaagggaatccaaacatttcaagaaggccatacttccctcgcccattcatgacaaagagatagtaagtttccctttccgt |
197577 |
T |
|
| Q |
519 |
ttttagttactgtcattctctgctt |
543 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
197576 |
ttttagttactgtcattctttgctt |
197552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 20 - 543
Target Start/End: Original strand, 203890 - 204416
Alignment:
| Q |
20 |
agtatgttccttctagttttgctgaaaagcatctgacgctaaaggttccgttcaagctccaaaattctcaaggaaagcagtgggaagtttattgtgtatt |
119 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || ||| ||||| ||||||||||| ||||||||| | |||||||||| |||| ||||||| || | | || |
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|
| T |
203890 |
agtatgttccttctggttttgctaaaaagtatttgatgctaatggttccgttcatgctccaaaactatcaaggaaagtagtgcgaagttttttttttttt |
203989 |
T |
|
| Q |
120 |
gcataacaaaggaaattcgcaaatgcgaataaccggtggattcggtaaatttgcaagggaaaacaatctactagagggagttacatatgtgtttgagctg |
219 |
Q |
| |
|
| ||| |||||||| || |||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
203990 |
gaatacaaaaggaaactcatcaatgcgaataacgagtggattcagtaaatttgcaagggaaaacaatctattagagggagttacatatgtgtttgagctg |
204089 |
T |
|
| Q |
220 |
atcaagagaaagcctgttgttgt---gctacaagttacagcgatttgcacggtttaaaaatctttcacatttgtctattcatcaattctaatttctttca |
316 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||| ||| ||||||||| || | |||||||||||| ||||||||||||||||||||||||| |
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|
| T |
204090 |
atcaagaggaagcctgttgttgttgtgttacaagttactgcgtcttgcacggtaaaacgttgtttcacatttgtttattcatcaattctaatttctttca |
204189 |
T |
|
| Q |
317 |
cagttttttcttttaatgtctgaactgttggtgaacttgatgcataaagtgataatagttattgcttattgcaatgcagcctccacagggaaggtctgtc |
416 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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|
| T |
204190 |
cagttttttcttttaatgtttgaactgttggtgaacttaatgcataaagtgataatagttattgcttattgtaatgcagcctccacagggaaggtcttcc |
204289 |
T |
|
| Q |
417 |
cagtcaatgacagaaaaggaagtaagggaattcaaacatttcaggaaggccatacttccctcgcccattcatgacaaagagatcgtaagtttccctttcc |
516 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| | ||||||| | || || ||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
204290 |
cagtcattgacagaaaaagaagtaagggaatccgaacattttaagatggacatacttccctcgcccattcatgacaaagagatagtaagtttcccttttt |
204389 |
T |
|
| Q |
517 |
gtttttagttactgtcattctctgctt |
543 |
Q |
| |
|
||||| ||||||||| ||||| ||||| |
|
|
| T |
204390 |
gttttgagttactgttattctttgctt |
204416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 47 - 250
Target Start/End: Complemental strand, 225908 - 225705
Alignment:
| Q |
47 |
agcatctgacgctaaaggttccgttcaagctccaaaattctcaaggaaagcagtgggaagtttattgtgtattgcata-acaaaggaaattcgcaaatgc |
145 |
Q |
| |
|
||||||||| || ||| |||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||| ||| | ||| ||| | | ||||| |
|
|
| T |
225908 |
agcatctgaagccaaatgttccgttcatgctccaaaattatcaaggaaagcagtgggaagtttcttgtgtattggatagagcaagtaaa-acaccaatgc |
225810 |
T |
|
| Q |
146 |
gaataaccggtggattcggtaaatttgcaagggaaaacaatctactagagggagttacatatgtgtttgagctgatcaagagaaagcctgttgttgtgct |
245 |
Q |
| |
|
|||| || |||||||| ||| |||||||||||||||||||||| | ||| |||| || ||||||||||| ||||||||||||||||||||| | |
|
|
| T |
225809 |
gaattacgagtggattctgtagatttgcaagggaaaacaatctatcaaaggaagttttttacaactttgagctgataaagagaaagcctgttgttgtgtt |
225710 |
T |
|
| Q |
246 |
acaag |
250 |
Q |
| |
|
||||| |
|
|
| T |
225709 |
acaag |
225705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 47 - 258
Target Start/End: Complemental strand, 211445 - 211234
Alignment:
| Q |
47 |
agcatctgacgctaaaggttccgttcaagctccaaaattctcaaggaaagcagtgggaagtttattgtgtattgcataacaaaggaaattcgcaaatgcg |
146 |
Q |
| |
|
||||||||| || ||| |||||||||| |||||||||||||||| ||||||||||||||||| | ||| |||| ||| |||||| | |||||| |
|
|
| T |
211445 |
agcatctgaagccaaatgttccgttcatgctccaaaattctcaaaaaaagcagtgggaagtttctggtgcattggatagaccaggaaaaccagcaatgcg |
211346 |
T |
|
| Q |
147 |
aataaccggtggattcggtaaatttgcaagggaaaacaatctactagagggagttacatatgtgtttgagctgatcaagagaaagcctgttgttgtgcta |
246 |
Q |
| |
|
|||||| |||| || ||| |||| ||||||||||| || |||| ||||||| | | ||| |||||||||||| ||||||||||||||| || |
|
|
| T |
211345 |
aataactattggaatccgtagatttcttagggaaaacaagttattagatggagttatttgtcgctttaagctgatcaagaagaagcctgttgttgtgata |
211246 |
T |
|
| Q |
247 |
caagttacagcg |
258 |
Q |
| |
|
|||||||||||| |
|
|
| T |
211245 |
caagttacagcg |
211234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 225310 - 225255
Alignment:
| Q |
441 |
agggaattcaaacatttcaggaaggccatacttccctcgcccattcatgacaaaga |
496 |
Q |
| |
|
||||||| ||||||||| | |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
225310 |
agggaatccaaacattttaagaaggccatacttccctcacccattcatgacaaaga |
225255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 216753 - 216680
Alignment:
| Q |
36 |
ttttgctgaaaagcatctgacgctaaaggttccgttcaagctccaaaattctcaaggaaagcagtgggaagttt |
109 |
Q |
| |
|
||||||| ||||||||||| | ||| ||||| | ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
216753 |
ttttgcttcaaagcatctgaatccaaatgttcctataaagctccaaaattctcacggaaagcagtgggaagttt |
216680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 543
Target Start/End: Complemental strand, 6904595 - 6904074
Alignment:
| Q |
20 |
agtatgttccttctagttttgctgaaaagcatctgacgctaaaggttccgttcaagctccaaaattctcaaggaaagcagtgggaagtttattgtgtatt |
119 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || ||| ||||| ||||| ||||| ||||||||| | |||||||||||||||||||||||||||| | || |
|
|
| T |
6904595 |
agtatgttccttctggttttgctaaaaagtatttgatgctaatggttctgttcatgctccaaaactatcaaggaaagcagtgggaagtttattgtatttt |
6904496 |
T |
|
| Q |
120 |
gcataacaaaggaaattcgcaaatgcgaataaccggtggattcggtaaatttgcaagggaaaacaatctactagagggagttacatatgtgtttgagctg |
219 |
Q |
| |
|
| ||| |||||||| || |||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| | ||||||| || |
|
|
| T |
6904495 |
gaatacaaaaggaaactcatcaatgcgaataacgagtggattcagtaaatttgcaagggaaaacaatctatcagagggagttacat--gggtttgagttg |
6904398 |
T |
|
| Q |
220 |
atcaagagaaagcctgttgttgtgctacaagttacagcgatttgcacggtttaaaaatctttcacatttgtctattcatcaattctaatttctttcacag |
319 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||| ||| ||||||||| || | |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6904397 |
atcaagaggaagcctgttgttgtgttacaagttactgcgtcttgcacggtaaaacgttgtttcacatttgtttattcatcaattctaatttctttcacag |
6904298 |
T |
|
| Q |
320 |
ttttttcttttaatgtctgaactgttggtgaacttgatgcataaagtgataatagttattgcttattgcaatgcagcctccacagggaaggtctgtccag |
419 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6904297 |
ttttttcttttaatgtttgaactattggtgaacttaatgcataaagtgataataattattgcttattgcaatgcagcctccacagggaaggtcttcccag |
6904198 |
T |
|
| Q |
420 |
tcaatgacagaaaaggaagtaagggaattcaaacatttcaggaaggccatacttccctcgcccattcatgacaaagagatcgtaagtttccctttccgtt |
519 |
Q |
| |
|
||| |||||||||| ||||||||||||| | ||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
6904197 |
tcattgacagaaaaagaagtaagggaatccgaacattttaagatggccatacttccctcgcccattcatgacaaagagatagtaagtttccctttctgtt |
6904098 |
T |
|
| Q |
520 |
tttagttactgtcattctctgctt |
543 |
Q |
| |
|
|| ||||||||| ||||| ||||| |
|
|
| T |
6904097 |
ttgagttactgttattctttgctt |
6904074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 6903095 - 6903054
Alignment:
| Q |
76 |
ctccaaaattctcaaggaaagcagtgggaagtttattgtgta |
117 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| |||||||| |
|
|
| T |
6903095 |
ctccaaaattctcaaggaaagcattggaaagttcattgtgta |
6903054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 34121769 - 34121882
Alignment:
| Q |
141 |
aatgcgaataaccggtggattcggtaaatttgcaagggaaaacaatctactagagggagttacatatgtgtttgagctgatcaagagaaagcctgttgtt |
240 |
Q |
| |
|
|||||||||||| ||||||| || |||||| ||||||||||||||| | || ||||||| |||| |||||||||||||||||| |||||| |||| |
|
|
| T |
34121769 |
aatgcgaataacgtttggattctttagatttgcgagggaaaacaatctatttgatggagttatttatgagtttgagctgatcaagaggaagcctcatgtt |
34121868 |
T |
|
| Q |
241 |
gtgctacaagttac |
254 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
34121869 |
gtgttacaagttac |
34121882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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