View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_high_21 (Length: 524)
Name: NF11703_high_21
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 511
Target Start/End: Original strand, 42006597 - 42007088
Alignment:
| Q |
19 |
ctcaacgcaactgcaatttaaaaccatggtcttaaagacttcaccataacgataatagcagtcacatgctacctaattgactataattgttcatcatcaa |
118 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42006597 |
ctcaacgcaactgcaatttaaaaccatggtctttaagacttcaccataacgataatagcagtcacatgctacctaattgactataattgttcatcatcaa |
42006696 |
T |
|
| Q |
119 |
tgaccacaatacaatcgtgaagcagttatagtttaaaactttgatctccttaaccgtatcacgattgcaattgtagccacacagcggcacatacctaatg |
218 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42006697 |
tgaccacaatacaatcgtgaagcagtcatagtttaaaactttgatctccttaaccgtatcacgattgcaattgtagccacacagcggcacatacctactg |
42006796 |
T |
|
| Q |
219 |
gaccgcaatgtgcccaatatgaggaatcacaacacaatcatgatggaaatgcaatttaaaacctcgatcttggtgatttcatcctaaccacaaccgcact |
318 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42006797 |
gactgcaatgtgcccaatatgaggaatcacaacacaatcatgatggaaatgcaatttaaaacctcgatcttggtgatttcatcctaaccacaaccgcact |
42006896 |
T |
|
| Q |
319 |
tgtatcataccttattgactttaattttctcacagaccaggatcacaactgtgacataaccacgatttaaaattttgatctttctggtcacattgcagcc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42006897 |
tgtatcataccttattgactttaattttctcacagaccaggatcacaactgtgacataaccacgattt-aaattttgatctttctggtcacattgcagcc |
42006995 |
T |
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| Q |
419 |
acaattgaatatgtgtcgtacttaattggctacatttttctcatgatcaaggatcacaaatcctgagaaactcgattttaaatcttgacctct |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42006996 |
acaattgaatatgtgtcgtacttaattggctacatttttctcatgatcaaggatcacaaatcctgagaaactcgattttaaatcttgacctct |
42007088 |
T |
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