View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11703_high_28 (Length: 467)

Name: NF11703_high_28
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11703_high_28
NF11703_high_28
[»] chr1 (5 HSPs)
chr1 (5-454)||(8103384-8103833)
chr1 (5-430)||(8101931-8102335)
chr1 (5-242)||(8099559-8099804)
chr1 (58-215)||(34970739-34970904)
chr1 (67-127)||(41419024-41419085)
[»] chr3 (6 HSPs)
chr3 (58-250)||(25045997-25046197)
chr3 (37-264)||(32278962-32279197)
chr3 (149-250)||(42028617-42028718)
chr3 (1-44)||(42957790-42957833)
chr3 (146-196)||(24373439-24373489)
chr3 (164-215)||(39439298-39439349)
[»] chr5 (3 HSPs)
chr5 (37-290)||(30085504-30085770)
chr5 (149-247)||(4944466-4944564)
chr5 (159-196)||(11617877-11617914)
[»] chr4 (5 HSPs)
chr4 (37-242)||(35033185-35033398)
chr4 (37-215)||(13779848-13780034)
chr4 (159-250)||(21261066-21261157)
chr4 (254-290)||(4291954-4291990)
chr4 (159-215)||(35292687-35292743)
[»] chr2 (2 HSPs)
chr2 (37-250)||(28198518-28198739)
chr2 (149-250)||(28219720-28219821)
[»] chr7 (2 HSPs)
chr7 (37-215)||(19626020-19626205)
chr7 (407-454)||(24916637-24916684)
[»] scaffold0022 (2 HSPs)
scaffold0022 (159-215)||(43502-43558)
scaffold0022 (159-215)||(77222-77278)
[»] chr8 (1 HSPs)
chr8 (148-220)||(38680508-38680580)


Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 5 - 454
Target Start/End: Complemental strand, 8103833 - 8103384
Alignment:
Q  5 cttaatttgtggtgctattaatatttattctggtgctacttatgaaaagtattaaaataattacatattgattgaattgagttatgaattcaacatagtg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||||    
T  8103833 cttaatttgtggtgctattaatatttattctggtgctacttatgaaaagtatcaaaataatcatatattgattgaattgagttatgaattcaagatagtg 8103734  T
Q  105 attcttttaaagtaaagggtaaaaatggaaaaacaattatactgttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  8103733 attcttttaaagtaaagggtaaaaatggaaaaacaattatactgttccatccattttttaaataatggagtgggaaattagttttattccgttgtttaat 8103634  T
Q  205 atccaaacaattaaatagaatctttgttccactccgtttcattccacatcattccgttccgttaattttatgttatccaaacagagtctgactnnnnnnn 304  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||| ||||||||||||||||||||| |||| || ||||           
T  8103633 atccaaacaatgaaatagaatctttgttccactccgtttcattccacttcgttctgtttcgttaattttatgttatccaagcagaatccgactaaaaaaa 8103534  T
Q  305 cgtcgagatgttaattaatgatgtttctggatcattttgagcttcaattgtgacagttaaaggatgcataatagaggcaccattaacatcacggaattga 404  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8103533 cgtcaagatgttaattaatgatgtttatggatcattttgagcttcaactgtgacagttgaaggatgcataatagaggcaccattaacatcacggaattga 8103434  T
Q  405 tgctttgaaacatgagtaactcaacaacgactccttcatcattcatccct 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8103433 tgctttgaaacatgagtaactcaacaacgactccttcatcattcatccct 8103384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 5 - 430
Target Start/End: Complemental strand, 8102335 - 8101931
Alignment:
Q  5 cttaatttgtggtgctattaatatttattctggtgctacttatgaaaagtattaaaataattacatattgattgaattgagttatgaattcaacatagtg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  8102335 cttaatttgtggtgctattaatatttattctggtgctacttatgaaaaatatcaaaataattatatattgattgaattgagttatgaattcaacatagtg 8102236  T
Q  105 attcttttaaagtaaagggtaaaaatggaa-aaacaattatactgttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaa 203  Q
    |||||||||||||||||||||||||||||| | | ||  |||||||||  ||| ||||||||||||||||||||||||||||||||||||| | ||||||    
T  8102235 attcttttaaagtaaagggtaaaaatggaagagaaaaaaatactgttctgtccgttttctaaacaatggagtgggaaattagttttattccatcgtttaa 8102136  T
Q  204 tatccaaacaattaaatagaatctttgttccactccgtttcattccacatcattccgttccgttaattttatgttatccaaacagagtctgactnnnnnn 303  Q
    ||| ||||||||  |||  ||||||||||||||||||||          || ||||| ||||||| |||||| |||||||||||||| || |||          
T  8102135 tattcaaacaatggaatgaaatctttgttccactccgtt----------tcgttccgctccgttagttttatattatccaaacagagcctaactaaaaaa 8102046  T
Q  304 ncgtcgagatgttaattaatgatgtttctggatcattttgagcttcaattgtgacagttaaaggatgcataatagaggcaccattaacatcacggaattg 403  Q
     | ||||| ||    |||||||||||||||||||| |||||||||        |||||| |||||||||||||||||||||||||||| |||||||| ||    
T  8102045 acatcgagttg----ttaatgatgtttctggatcactttgagctt--------acagttgaaggatgcataatagaggcaccattaacttcacggaagtg 8101958  T
Q  404 atgctttgaaacatgagtaactcaaca 430  Q
    |||||||||||||||||||||||||||    
T  8101957 atgctttgaaacatgagtaactcaaca 8101931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 8099559 - 8099804
Alignment:
Q  5 cttaatttgtggtgctattaatatttattctggtgctacttatgaaaagtattaaaataattacatattgattgaattgagttatgaattcaacatagtg 104  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||  ||||||||| ||||||    
T  8099559 cttaatttatggtgctattaatatttattttggtgctacttatgaaaaatatcaaaataatcacatattgattgaattgagtgttgaattcaatatagtg 8099658  T
Q  105 attcttttaaagtaaagggtaaaaatg-gaaaaacaattata-------ctgttccatccattttctaaacaatggagtgggaaattagttttattccgt 196  Q
    |||||||||||||||||||||||||||  |||||||||||||        |||||| || |||||||||||||||||||||||||||||||| |||||||    
T  8099659 attcttttaaagtaaagggtaaaaatgaaaaaaacaattataactcattttgttccgtctattttctaaacaatggagtgggaaattagtttcattccgt 8099758  T
Q  197 tgtttaatatccaaacaattaaatagaatctttgttccactccgtt 242  Q
    |||||||||||||||||||  |||  ||||||||||||||||||||    
T  8099759 tgtttaatatccaaacaatggaatgaaatctttgttccactccgtt 8099804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 215
Target Start/End: Original strand, 34970739 - 34970904
Alignment:
Q  58 aaaataattacatattgattgaattgagttatgaattcaacatagtgattcttttaaagtaaagggtaaaaatggaaaaacaa--ttata-------ctg 148  Q
    ||||||| || |||||||||||||||||||   ||||||||| | ||| | ||||||| |||||||||||||||||| || ||   ||||       | |    
T  34970739 aaaataactatatattgattgaattgagttgacaattcaacaaattga-tattttaaactaaagggtaaaaatggaataaaaagggtataacacttcccg 34970837  T
Q  149 ttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaat 215  Q
    |||| |||| |||| ||||||||||||||||||||||||  |||||||  |  ||||||||||||||    
T  34970838 ttccgtccactttccaaacaatggagtgggaaattagttccattccgtcataaaatatccaaacaat 34970904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 41419024 - 41419085
Alignment:
Q  67 acatattgattgaattgagttatgaattcaacatagtgatt-cttttaaagtaaagggtaaa 127  Q
    |||||||||||||||||||||  ||||||| |||| ||||| ||||| || |||||||||||    
T  41419024 acatattgattgaattgagttgagaattcagcatattgattcctttttaaataaagggtaaa 41419085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 58 - 250
Target Start/End: Original strand, 25045997 - 25046197
Alignment:
Q  58 aaaataattacatattgattgaattgagttatgaattcaacatagtgattcttttaaagtaaagggtaaaaatgga--aaaacaattata-------ctg 148  Q
    ||||||| ||| ||||||||||||||||||  |||||||||||||||| | |||| ||||||||||||||||||||  |||| | |||||       | |    
T  25045997 aaaataactacgtattgattgaattgagttgagaattcaacatagtga-tgtttttaagtaaagggtaaaaatggaataaaaaagttataaatcattccg 25046095  T
Q  149 ttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaatagaatctttgttccactccgtttcattc 248  Q
    |||||| || ||||||||||||||||||| |||||||||  ||||||| ||  ||||||||||||||   || ||| ||||||||| ||||||| |||||    
T  25046096 ttccattcactttctaaacaatggagtggaaaattagttcaattccgtagtaaaatatccaaacaataggatggaacctttgttccgctccgttccattc 25046195  T
Q  249 ca 250  Q
    ||    
T  25046196 ca 25046197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 264
Target Start/End: Original strand, 32278962 - 32279197
Alignment:
Q  37 gtgctacttatgaaaagtattaaaataattacatattgattgaattgagttatgaattcaacatagtgattcttttaaagtaaagggtaaaaatggaa-- 134  Q
    |||||| ||||||| | | | ||||||| ||| ||||||||||||||||||  |||||||||||||||| | |||| |||||||||||||||||||||      
T  32278962 gtgctatttatgaataatgtcaaaataactacttattgattgaattgagttgagaattcaacatagtga-tgtttttaagtaaagggtaaaaatggaatg 32279060  T
Q  135 aaacaattata-------ctgttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaatagaatct 227  Q
    ||| | |||||       | ||||||| || |||| |||||||||||||| |||||||||  ||||||| ||  ||||||||||||||   || ||| ||    
T  32279061 aaaaagttataaatcattccgttccattcactttccaaacaatggagtggaaaattagttcaattccgtagtaaaatatccaaacaataggatggaacct 32279160  T
Q  228 ttgttccactccgtttcattccacatcattccgttcc 264  Q
    ||||||| ||||||| |||||||   |||||||||||    
T  32279161 ttgttccgctccgttccattccattccattccgttcc 32279197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 42028718 - 42028617
Alignment:
Q  149 ttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaatagaatctttgttccactccgtttcattc 248  Q
    |||| |||| |||| ||||||||||||||||||||||||  ||||||  || |||||||||||||||  |||  ||||||||||||||||| || |||||    
T  42028718 ttccgtccactttccaaacaatggagtgggaaattagttccattccgccgtataatatccaaacaatggaatgaaatctttgttccactccattccattc 42028619  T
Q  249 ca 250  Q
    ||    
T  42028618 ca 42028617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 42957790 - 42957833
Alignment:
Q  1 ttaccttaatttgtggtgctattaatatttattctggtgctact 44  Q
    |||||||||||||||||||||||||| |||||| ||||||||||    
T  42957790 ttaccttaatttgtggtgctattaatgtttattatggtgctact 42957833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 24373489 - 24373439
Alignment:
Q  146 ctgttccatccattttctaaacaatggagtgggaaattagttttattccgt 196  Q
    |||||||||||| |||| |||||||||| |||||||||||||| |||||||    
T  24373489 ctgttccatccactttccaaacaatggaatgggaaattagtttcattccgt 24373439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 39439349 - 39439298
Alignment:
Q  164 aaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaat 215  Q
    ||||||||||||||||||||||||| |||||||  |  ||||||||||||||    
T  39439349 aaacaatggagtgggaaattagtttcattccgtcttgaaatatccaaacaat 39439298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 290
Target Start/End: Original strand, 30085504 - 30085770
Alignment:
Q  37 gtgctacttatgaaaagtattaaaataattacatattgattgaattgagttatgaattcaacatagtgattcttttaaagtaaagggtaaaaatgga--a 134  Q
    |||||| ||||||| | | | ||||||| ||| ||||||||||||||||||  |||||||||||||||| | |||| |||||||||||||||||| |  |    
T  30085504 gtgctatttatgaataatgtcaaaataactacgtattgattgaattgagttgagaattcaacatagtga-tgtttttaagtaaagggtaaaaatgaaata 30085602  T
Q  135 aaacaattata-------ctgttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaatagaatct 227  Q
    ||| | |||||       | ||||||| || |||| |||||||||||||| |||||||||  ||||||| ||  ||||||||||||||   || ||| ||    
T  30085603 aaaaagttataaatcattccgttccattcactttccaaacaatggagtggaaaattagttcaattccgtagtaaaatatccaaacaataggatggaacct 30085702  T
Q  228 ttgttccactccgtttcattccacatcattccgt-----tccgttaattttatgttatccaaacagag 290  Q
    ||||||| ||||||| || ||| |  ||||||||     ||||||| ||| |||||||||||||||||    
T  30085703 ttgttccgctccgttccactccgctccattccgttccgctccgttagtttcatgttatccaaacagag 30085770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 4944466 - 4944564
Alignment:
Q  149 ttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaatagaatctttgttccactccgtttcatt 247  Q
    |||| |||| |||| ||||||||||||  ||||||||||  ||| ||| || |||||||||||||||  ||| ||||||||||||||||||||| ||||    
T  4944466 ttccgtccactttccaaacaatggagtatgaaattagttccatttcgtcgtataatatccaaacaatggaatggaatctttgttccactccgttccatt 4944564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 11617877 - 11617914
Alignment:
Q  159 tttctaaacaatggagtgggaaattagttttattccgt 196  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  11617877 tttccaaacaatggagtgggaaattagtttcattccgt 11617914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 37 - 242
Target Start/End: Complemental strand, 35033398 - 35033185
Alignment:
Q  37 gtgctacttatgaaaagtattaaaataattacatattgattgaattgagttatgaattcaacatagtgattcttttaaagtaaagggtaaaaatgga--a 134  Q
    |||||| ||||||| | | | ||||||| ||| ||||||||||||||||||  |||||||||||||||| | |||| ||||||| ||||||||||||  |    
T  35033398 gtgctatttatgaataatgtcaaaataactacgtattgattgaattgagttgagaattcaacatagtga-tgtttttaagtaaatggtaaaaatggaata 35033300  T
Q  135 aaacaattata-------ctgttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaatagaatct 227  Q
    ||| |||||||       | ||||||| || |||| |||||||||||||| |||||||||  ||||||| ||  ||||||||||||||   || ||| ||    
T  35033299 aaaaaattataaatcattccgttccattcactttccaaacaatggagtggaaaattagttccattccgtagtaaaatatccaaacaataggatggaacct 35033200  T
Q  228 ttgttccactccgtt 242  Q
    ||||||| |||||||    
T  35033199 ttgttccgctccgtt 35033185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 37 - 215
Target Start/End: Original strand, 13779848 - 13780034
Alignment:
Q  37 gtgctacttatgaaaagtattaaaataattacatattgattgaattgagttatgaattcaacatagtgattcttttaaagtaaagggtaaaaatgga--a 134  Q
    |||||| ||||||| | | | ||||||| ||| ||||||||||||||||||  |||||||||||||||| | |||| ||||||| ||||||||||||  |    
T  13779848 gtgctatttatgaataatgtcaaaataactacgtattgattgaattgagttgagaattcaacatagtga-tgtttttaagtaaatggtaaaaatggaata 13779946  T
Q  135 aaacaattata-------ctgttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaat 215  Q
    ||| |||||||       | ||||||| || |||| |||||||||||||| |||||||||  ||||||| ||  ||||||||||||||    
T  13779947 aaaaaattataaatcattccgttccattcactttccaaacaatggagtggaaaattagttccattccgtagtaaaatatccaaacaat 13780034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 21261157 - 21261066
Alignment:
Q  159 tttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaatagaatctttgttccactccgtttcattcca 250  Q
    |||| |||||||||||| | |||||||| | |||||||  | ||||||| |||||||  ||| |||||||||||||||||| || |||||||    
T  21261157 tttccaaacaatggagtagaaaattagtctcattccgtcatataatatcaaaacaatggaatggaatctttgttccactccattccattcca 21261066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 4291990 - 4291954
Alignment:
Q  254 cattccgttccgttaattttatgttatccaaacagag 290  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  4291990 cattccgctccgttaattttaggttatccaaacagag 4291954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 35292687 - 35292743
Alignment:
Q  159 tttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaat 215  Q
    |||| ||||||||||||||||||||||||  |||||||  |  ||||||||||||||    
T  35292687 tttccaaacaatggagtgggaaattagttccattccgtcttgaaatatccaaacaat 35292743  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 250
Target Start/End: Complemental strand, 28198739 - 28198518
Alignment:
Q  37 gtgctacttatgaaaagtattaaaataattacatattgattgaattgagttatgaattcaacatagtgattcttttaaagtaaagggtaaaaatgga--a 134  Q
    |||||| ||||||| | | | ||||||| ||| ||||||||||||||||||  |||||||||||||||| | |||| ||||||||||||||||||||  |    
T  28198739 gtgctatttatgaataatgtcaaaataactacgtattgattgaattgagttgagaattcaacatagtga-tgtttttaagtaaagggtaaaaatggaata 28198641  T
Q  135 aaacaattata-------ctgttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaatagaatct 227  Q
    ||| | |||||       | ||||||| || |||| |||||||| ||||| |||||||||  ||||||| ||  ||||||||||||||    | ||| ||    
T  28198640 aaaaagttataaatcattccgttccattcactttccaaacaatgaagtggaaaattagttccattccgtagtaaaatatccaaacaatagggtggaacct 28198541  T
Q  228 ttgttccactccgtttcattcca 250  Q
    ||||||| ||||||| |||||||    
T  28198540 ttgttccgctccgttccattcca 28198518  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 149 - 250
Target Start/End: Original strand, 28219720 - 28219821
Alignment:
Q  149 ttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaatagaatctttgttccactccgtttcattc 248  Q
    |||| |||| |||| ||||||||||||||||||||||||  ||||||  || |||||||||||||||  |||  ||||||||||||||||| || |||||    
T  28219720 ttccgtccactttccaaacaatggagtgggaaattagttccattccgccgtataatatccaaacaatggaatgaaatctttgttccactccattccattc 28219819  T
Q  249 ca 250  Q
    ||    
T  28219820 ca 28219821  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 215
Target Start/End: Original strand, 19626020 - 19626205
Alignment:
Q  37 gtgctacttatgaaaagtattaaaataattacatattgattgaattgagttatgaattcaacatagtgattcttttaaagtaaagggtaaaaatgga--a 134  Q
    |||||| ||||||| | | | ||||||| ||||||||||||||||||||||  |||||||||| ||||| | |||| ||||||||||||||||||||  |    
T  19626020 gtgctatttatgaataatgtcaaaataactacatattgattgaattgagttgagaattcaaca-agtga-tgtttttaagtaaagggtaaaaatggaata 19626117  T
Q  135 aaacaattata-------ctgttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaat 215  Q
    ||| |||||||       | ||||||| || |||| ||||||| |||||| |||||||||  ||||||| ||  ||||||||||||||    
T  19626118 aaaaaattataaatcattccgttccattcactttccaaacaattgagtggaaaattagttccattccgtagtaaaatatccaaacaat 19626205  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 454
Target Start/End: Complemental strand, 24916684 - 24916637
Alignment:
Q  407 ctttgaaacatgagtaactcaacaacgactccttcatcattcatccct 454  Q
    ||||||||| ||||||||||| ||||  ||||||||||||||||||||    
T  24916684 ctttgaaacctgagtaactcagcaacatctccttcatcattcatccct 24916637  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 43558 - 43502
Alignment:
Q  159 tttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaat 215  Q
    |||| |||||||||| || ||||||||||| ||||||| ||  ||||||||||||||    
T  43558 tttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaacaat 43502  T

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Target: scaffold0022; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 77278 - 77222
Alignment:
Q  159 tttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaat 215  Q
    |||| |||||||||| || ||||||||||| ||||||| ||  ||||||||||||||    
T  77278 tttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaacaat 77222  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 38680508 - 38680580
Alignment:
Q  148 gttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaat 220  Q
    ||||| |||| |||| || |||||||||||||||||||||  ||||| | ||  |||||||||||||| ||||    
T  38680508 gttccgtccactttccaagcaatggagtgggaaattagttcaattccatcgtaaaatatccaaacaatgaaat 38680580  T

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