View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11703_high_3 (Length: 801)
Name: NF11703_high_3
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_3 |
 | |
|
| [»] scaffold0015 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 670; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 18 - 795
Target Start/End: Original strand, 9809722 - 9810497
Alignment:
| Q |
18 |
cacttcgaacggaatacttaccactcttctcccctttccaaattaatttatcttccgtaacaagaggttgtagtggtgtgttaagaataagttgagcaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9809722 |
cacttcgaacggaatacttaccactcttctcccctttccaaattaatttatcttccgtaacaagaggttgtagtggtgtgttaagaataagttgtgcagt |
9809821 |
T |
|
| Q |
118 |
gggcatatcaaatatattataaattaagggagctttacaaaccttcaaatcatgatcaataaaatcacacaatttcaccagcatataggctcaaatattg |
217 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9809822 |
gggcatatcaaatagattataaattaagggagctttacaaaccttcaaatcatgatcaataaaatcacacaatttcaccagcatataggctcaaatattg |
9809921 |
T |
|
| Q |
218 |
aactagtcgtgaacaaggacaaaccgtctttaagccaaggagcacctaaaaaaggtatattagctcctgagcctatacgccaccgcacaccctgttttac |
317 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9809922 |
aactagtcatgaacaagcacaaaccgtctttaagccaaggagtacctaaaaaaggtatattagctcttgagcctatacgccaccgcacaccctgttttac |
9810021 |
T |
|
| Q |
318 |
cataattttagcactaaaaatactcctccaaacattacttggagtatgtccaatactagaccccataaaattagtgttaggaaaaattgtgccttaaaca |
417 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9810022 |
cataattttagcactaaaaatactcttccaaacataacttggagtatgtccaatactagaccccataaaatcagtgttaggaaaaattgtgccttaaaca |
9810121 |
T |
|
| Q |
418 |
aacgagaaacaaagctagtgggatcaatttgaaatctccaaccttgtttatctaacatagccacattaaaagatgtcaactcattaaagctcatacctcc |
517 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9810122 |
aacgagaaacaaggctagttggatcaatttgaaatctccaaccttgtttatctaacatagccacattaaaagatgtcaactcattaaagctcatacctcc |
9810221 |
T |
|
| Q |
518 |
nnnnnnnttatgaacgaaaaacttttcccaagacatccagtgtaacccacgccgcgtgctatcaccatgaccccaccaaaaagcattgataattttttca |
617 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9810222 |
aaaaaaattatgaacaaataacttttcccaagacatccagtgtaacccacgccgcgtgctaccacc--gaccccaccaaaaagcattgataattttttca |
9810319 |
T |
|
| Q |
618 |
acagaatcaattagcttagaagggagcaaaaatacactcataatataagatggaatagtctggagtaccgatttgatcattacccctctacaagccatgg |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9810320 |
acagaatcaattagcttagaagggagcaaaaatacactcataatataagatgaaatagtctggagtaccgattcgatcattacccctctacaagccatgg |
9810419 |
T |
|
| Q |
718 |
ataagcacttgctactccaactattaattgtgtgccaaatacggtccttaatgaaaccaaatgtcgcttctctgcttc |
795 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9810420 |
ataagcacttgctactccaactattaattgtgtgccaaatacggtccttaatgaaaccaaatgtcgcttctttgcttc |
9810497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 469 - 784
Target Start/End: Original strand, 26952898 - 26953213
Alignment:
| Q |
469 |
ctaacatagccacattaaaagatgtcaactcattaaagctcatacctccnnnnnnnttatgaacgaaaaacttttcccaagacatccagtgtaacccacg |
568 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||||||| ||| ||||| |||||||| || || ||||||| |||||||| ||||| ||||| |
|
|
| T |
26952898 |
ctaacatagccacattaaaagaggtcaaatccttaaagcccatgcctccaaaatatttatgaacaaacaatctttcccaggacatccaatgtaatccacg |
26952997 |
T |
|
| Q |
569 |
ccgcgtgctatcaccatgaccccaccaaaaagcattgataattttttcaacagaatcaattagcttagaagggagcaaaaatacactcataatataagat |
668 |
Q |
| |
|
||| | || | ||||| |||||||| |||||||| || | |||||| | | ||||| |||||| || || ||||| | ||||||||||||||| |
|
|
| T |
26952998 |
acgcatattaccgccatggccccaccagaaagcattaatcaatttttctattgcatcaacaagcttatttggaagtaaaaaaatgctcataatataagat |
26953097 |
T |
|
| Q |
669 |
ggaatagtctggagtaccgatttgatcattacccctctacaagccatggataagcacttgctactccaactattaattgtgtgccaaatacggtccttaa |
768 |
Q |
| |
|
|| || | || ||||||||||||||||||||| ||| || ||| |||| || ||||| |||||||||| |||||| ||||||||||| ||||||| | |
|
|
| T |
26953098 |
gggattgattgtagtaccgatttgatcattacctctcgaccagctttggacaaacacttattactccaactgttaattttgtgccaaatatggtccttga |
26953197 |
T |
|
| Q |
769 |
tgaaaccaaatgtcgc |
784 |
Q |
| |
|
| |||||||| ||||| |
|
|
| T |
26953198 |
taaaaccaaaagtcgc |
26953213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 470 - 796
Target Start/End: Complemental strand, 18177801 - 18177475
Alignment:
| Q |
470 |
taacatagccacattaaaagatgtcaactcattaaagctcatacctccnnnnnnnttatgaacgaaaaacttttcccaagacatccagtgtaacccacgc |
569 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||| ||||||||| |||||||| | ||| |||||||||||||| | ||||| || || |
|
|
| T |
18177801 |
taacatagccacattaaaagatgtcaaatccttaaagcccatacctccaaaaaaattatgaacagacaacctttcccaagacatcgaatgtaatccgcga |
18177702 |
T |
|
| Q |
570 |
cgcgtgctatcaccatgaccccaccaaaaagc-attgataattttttcaacagaatcaattagcttagaagggagcaaaaatacactcataatataagat |
668 |
Q |
| |
|
||| | | | || || ||||||||||||| ||| || |||||||| | | ||||| |||||| || || ||||| | ||||| ||||||||| |
|
|
| T |
18177701 |
cgcatatcaccgccgtggccccaccaaaaagggattaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcatgatataagat |
18177602 |
T |
|
| Q |
669 |
ggaatagtctggagtaccgatttgatcattacccctctacaagccatggataagcacttgctactccaactattaattgtgtgccaaatacggtccttaa |
768 |
Q |
| |
|
|| |||| || | ||||||||| ||||||||| ||| || |||| |||| ||||||||||| ||| ||||||||||| ||||||||||| |||||| | |
|
|
| T |
18177601 |
gggatagattgtaataccgatttaatcattacctctccaccagccttggacaagcacttgctgctc-aactattaattttgtgccaaatatagtccttta |
18177503 |
T |
|
| Q |
769 |
tgaaaccaaatgtcgcttctctgcttct |
796 |
Q |
| |
|
| |||||||||||||| ||| ||||||| |
|
|
| T |
18177502 |
taaaaccaaatgtcgcctctttgcttct |
18177475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 654 - 766
Target Start/End: Original strand, 21277989 - 21278101
Alignment:
| Q |
654 |
ctcataatataagatggaatagtctggagtaccgatttgatcattacccctctacaagccatggataagcacttgctactccaactattaattgtgtgcc |
753 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||| | | || |||| |||| || || ||||| ||||||||||||||| |||||| |
|
|
| T |
21277989 |
ctcataatataagatgggatagattggagtaccgatttgatcattacctcacgaccagccttggacaaacatttgctgctccaactattaattttgtgcc |
21278088 |
T |
|
| Q |
754 |
aaatacggtcctt |
766 |
Q |
| |
|
||||||||||||| |
|
|
| T |
21278089 |
aaatacggtcctt |
21278101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 651 - 696
Target Start/End: Complemental strand, 18479703 - 18479658
Alignment:
| Q |
651 |
acactcataatataagatggaatagtctggagtaccgatttgatca |
696 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
18479703 |
acactcataatataagaaggaatagattggagtaccgatttgatca |
18479658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 795
Target Start/End: Complemental strand, 20490309 - 20489532
Alignment:
| Q |
18 |
cacttcgaacggaatacttaccactcttctcccctttccaaattaatttatcttccgtaacaagaggttgtagtggtgtgttaagaataagttgagcaac |
117 |
Q |
| |
|
|||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||| ||| | |
|
|
| T |
20490309 |
cacttcgaacaaaatactttccactcttatcccctttccaaattaatttatcttccgtaacaagatgttgtagcggtgtgttaaggatacgttgtgca-c |
20490211 |
T |
|
| Q |
118 |
gggcatatcaaatatattataaattaagggagctttacaaaccttcaaatcatgatcaataaaatcacacaatttcaccagcat-ataggctcaaatatt |
216 |
Q |
| |
|
||| |||||||| ||||||||||| |||| |||| ||||||||||||| | |||||||||||||||||||||||| || | ||||||||||||| |
|
|
| T |
20490210 |
tggcgcatcaaataaattataaattaggggatctttctaaaccttcaaatccaggtcaataaaatcacacaatttcacctacaacaaaggctcaaatatt |
20490111 |
T |
|
| Q |
217 |
gaactagtcgtgaacaaggacaaaccgtctttaagccaaggagcacctaaaaaaggtatattagctcctgagcctatacgccaccgcacaccctgtttta |
316 |
Q |
| |
|
||| |||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| | |||| || || | ||||||| |
|
|
| T |
20490110 |
gaattagtcgtggacaaggacaatccgtctttaagccagggagcacccaaaaaaggtatattagctcctgagcctacaggccatagcgcatcatgtttta |
20490011 |
T |
|
| Q |
317 |
ccataattttagcactaaaaatactcctccaaacattacttggagtatgtccaatactagaccccataaaattagtgttaggaaaa-attgtgccttaaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |||||| ||| ||||| |||| || |||||||||| |
|
|
| T |
20490010 |
ccataattttagcactaaaaatactcctgtaaacataacttggattatgtccaatactagactgaataaaactagagttagaaaaatatcgtgccttaaa |
20489911 |
T |
|
| Q |
416 |
caaacgagaaacaaagctagtgggatcaatttgaaatctccaaccttgtttatctaacatagccacattaaaagatgtcaactcattaaagctcatacct |
515 |
Q |
| |
|
|||||||||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||| | ||||||||||||| || ||||| ||||||||| |
|
|
| T |
20489910 |
caaacgagaaacaaggctagtggggtcagtttgaaatctccaaccttgtttacctaacatagccataataaaagatgtcaagtccttaaacctcatacct |
20489811 |
T |
|
| Q |
516 |
ccnnnnnnnttatgaacgaaaaacttttcccaagacatccagtgtaacccacgccgcgtgctatcaccatgaccccaccaaaaagcattgataatttttt |
615 |
Q |
| |
|
|| |||||||| | ||||||||| ||||||||| |||||||||||| |||||| || |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20489810 |
ccaaaacaattatgaacagacaacttttccaaagacatccggtgtaacccacgtcgcgtgttaccaccatgaccccaccaaaaagcattgat-atttttt |
20489712 |
T |
|
| Q |
616 |
caacagaatcaattagcttagaagggagcaaaaatacactcataatataagatggaatagtctggagtaccgatttgatcattacccctctacaagccat |
715 |
Q |
| |
|
||| | ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||| |||||| | || | |
|
|
| T |
20489711 |
caataacatcaactagtttagaagggagcaaaaatacactcataatataagatgaaatagattggagtatcgatttgatcattacctctctaccaacctt |
20489612 |
T |
|
| Q |
716 |
ggataagcacttgctactccaactattaattgtgtgccaaatacggtccttaatgaaaccaaatgtcgcttctctgcttc |
795 |
Q |
| |
|
||||| ||| |||||||||||||||||||| |||| ||||||| |||||||||||||||||||| || ||| |||||| |
|
|
| T |
20489611 |
ggatactcacatgctactccaactattaattttgtggcaaatacactccttaatgaaaccaaatgttgcctctttgcttc |
20489532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 124 - 505
Target Start/End: Original strand, 9815322 - 9815704
Alignment:
| Q |
124 |
atcaaatatattataaattaagggagctttacaaaccttcaaatcatgatcaataaaatcacacaatttcaccagcat-ataggctcaaatattgaacta |
222 |
Q |
| |
|
|||||| | ||||| ||| | ||| ||||| || ||||||||||| || |||||| | |||| ||||||||| |||| | ||||||||| |||| | || |
|
|
| T |
9815322 |
atcaaacaaattatgaataaggggcgctttccacaccttcaaatcttggtcaatagattcacttaatttcacctgcatcaaaggctcaaaaattggatta |
9815421 |
T |
|
| Q |
223 |
gtcgtgaacaaggacaaaccgtctttaagccaaggagcacctaaaaaaggtatattagctcctgagcctatacgccaccgcacaccctgttttaccataa |
322 |
Q |
| |
|
|| ||| | || |||||| | || || ||||||||||| |||||||||||||||||||| | || ||||| | ||| ||| | |||||||| |||| || |
|
|
| T |
9815422 |
gttgtggataaagacaaatcatcctttagccaaggagcgcctaaaaaaggtatattagcatcagaacctattctccaacgcgcgccctgtttcaccacaa |
9815521 |
T |
|
| Q |
323 |
ttttagcactaaaaatactcctccaaacattacttggagtatgtccaatactagaccccataaaattagtgttaggaaaa-attgtgccttaaacaaacg |
421 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||| | |||| |||||| |||| | || ||||||| ||||||||| || |||||||| | ||| |
|
|
| T |
9815522 |
ttttggcactaaagatactcctccaaacatagcttgaattatgcccaatattagaactaatgaaattagaattaggaaaatatctagccttaaatacacg |
9815621 |
T |
|
| Q |
422 |
agaaacaaagctagtgggatcaatttgaaatctccaaccttgtttatctaacatagccacattaaaagatgtcaactcattaaa |
505 |
Q |
| |
|
||| ||| | |||| | |||| |||| ||||||||||| ||||| |||||||||| ||||||||||||||||| || ||||| |
|
|
| T |
9815622 |
agagacaga-ctagacgaatcagtttggaatctccaaccctgttttcctaacatagctacattaaaagatgtcaaatccttaaa |
9815704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 124 - 505
Target Start/End: Original strand, 10717247 - 10717629
Alignment:
| Q |
124 |
atcaaatatattataaattaagggagctttacaaaccttcaaatcatgatcaataaaatcacacaatttcaccagcat-ataggctcaaatattgaacta |
222 |
Q |
| |
|
|||||| | ||||| ||| | ||| ||||| || ||||||||||| || |||||| | |||| ||||||||| |||| | ||||||||| |||| | || |
|
|
| T |
10717247 |
atcaaacaaattatgaataaggggcgctttccacaccttcaaatcttggtcaatagattcacttaatttcacctgcatcaaaggctcaaaaattggatta |
10717346 |
T |
|
| Q |
223 |
gtcgtgaacaaggacaaaccgtctttaagccaaggagcacctaaaaaaggtatattagctcctgagcctatacgccaccgcacaccctgttttaccataa |
322 |
Q |
| |
|
|| ||| | || |||||| | || || ||||||||||| |||||||||||||||||||| | || ||||| | ||| ||| | |||||||| |||| || |
|
|
| T |
10717347 |
gttgtggataaagacaaatcatcctttagccaaggagcgcctaaaaaaggtatattagcatcagaacctattctccaacgcgcgccctgtttcaccacaa |
10717446 |
T |
|
| Q |
323 |
ttttagcactaaaaatactcctccaaacattacttggagtatgtccaatactagaccccataaaattagtgttaggaaaa-attgtgccttaaacaaacg |
421 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||| | |||| |||||| |||| | || ||||||| ||||||||| || |||||||| | ||| |
|
|
| T |
10717447 |
ttttggcactaaagatactcctccaaacatagcttgaattatgcccaatattagaactaatgaaattagaattaggaaaatatctagccttaaatacacg |
10717546 |
T |
|
| Q |
422 |
agaaacaaagctagtgggatcaatttgaaatctccaaccttgtttatctaacatagccacattaaaagatgtcaactcattaaa |
505 |
Q |
| |
|
||| ||| | |||| | |||| |||| ||||||||||| ||||| |||||||||| ||||||||||||||||| || ||||| |
|
|
| T |
10717547 |
agagacaga-ctagacgaatcagtttggaatctccaaccctgttttcctaacatagctacattaaaagatgtcaaatccttaaa |
10717629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 580 - 668
Target Start/End: Original strand, 10326345 - 10326433
Alignment:
| Q |
580 |
caccatgaccccaccaaaaagcattgataattttttcaacagaatcaattagcttagaagggagcaaaaatacactcataatataagat |
668 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| |||| | ||||||||||||| |||||| ||||||| | |||| ||||||||| |
|
|
| T |
10326345 |
caccatgaccccaccaaaaagcatttatcattttctcaatggcatcaattagcttattagggagtaaaaatagaatcatgatataagat |
10326433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 195
Target Start/End: Original strand, 10326097 - 10326259
Alignment:
| Q |
33 |
acttaccactcttctcccctttccaaattaatttatcttccgtaacaagaggttgtagtggtgtgttaagaataagttgagcaacgggcatatcaaatat |
132 |
Q |
| |
|
||||||||||||||||||| |||||| | |||||||||||| || |||||||||| | | || |||||||| ||||| | | | || |||||| | |
|
|
| T |
10326097 |
acttaccactcttctcccccttccaactcaatttatcttccatatcaagaggttggcgaagagtattaagaattagttgtgtagtagtcacatcaaaaag |
10326196 |
T |
|
| Q |
133 |
attataaattaagggagctttacaaaccttcaaatcatgatcaataaaatcacacaatttcac |
195 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||||| | ||||||||||| ||| || ||||| |
|
|
| T |
10326197 |
attataaattgagggaactttccaaaccttcaaagattaatcaataaaataacataacttcac |
10326259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 715 - 757
Target Start/End: Original strand, 10326465 - 10326507
Alignment:
| Q |
715 |
tggataagcacttgctactccaactattaattgtgtgccaaat |
757 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| |||||||||| |
|
|
| T |
10326465 |
tggataagcacttactactctaactattaattttgtgccaaat |
10326507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 645 - 742
Target Start/End: Original strand, 9815846 - 9815943
Alignment:
| Q |
645 |
aaaaatacactcataatataagatggaatagtctggagtaccgatttgatcattacccctctacaagccatggataagcacttgctactccaactatt |
742 |
Q |
| |
|
||||| ||||||||||||||||| || |||| || ||||| ||||| ||||| ||| |||| | ||| | ||||| |||||||| ||||||||||| |
|
|
| T |
9815846 |
aaaaagacactcataatataagacgggatagattgtagtactgatttaatcataacctctctgccagctttagataaacacttgctgctccaactatt |
9815943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 645 - 742
Target Start/End: Original strand, 10717771 - 10717868
Alignment:
| Q |
645 |
aaaaatacactcataatataagatggaatagtctggagtaccgatttgatcattacccctctacaagccatggataagcacttgctactccaactatt |
742 |
Q |
| |
|
||||| ||||||||||||||||| || |||| || ||||| ||||| ||||| ||| |||| | ||| | ||||| |||||||| ||||||||||| |
|
|
| T |
10717771 |
aaaaagacactcataatataagacgggatagattgtagtactgatttaatcataacctctctgccagctttagataaacacttgctgctccaactatt |
10717868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 225; Significance: 1e-123; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 33 - 772
Target Start/End: Original strand, 37839789 - 37840530
Alignment:
| Q |
33 |
acttaccactcttctcccctttccaaattaatttatcttccgtaacaagaggttgtagtggtgtgttaagaataagttgagcaacgggcatatcaaatat |
132 |
Q |
| |
|
||||||||||||||| || ||||||||| ||||||||||||||||||||||| || || ||||| |||||| | | || ||| ||| | |||||||| |
|
|
| T |
37839789 |
acttaccactcttctaccttttccaaatcaatttatcttccgtaacaagaggctgaagcggtgtattaagagttaactgtgcagtgggaacatcaaatag |
37839888 |
T |
|
| Q |
133 |
attataaattaagggagctttacaaaccttcaaatcatgatcaataaaatcacacaatttcaccagcat-ataggctcaaatattgaactagtcgtgaac |
231 |
Q |
| |
|
||||||||||||||||||||| |||| ||| ||||| ||||||||||| || || ||||||||| ||| | |||||||||||||| | |||| | || |
|
|
| T |
37839889 |
attataaattaagggagctttccaaagctttaaatcttgatcaataaattcccataatttcacctgcaacaaaggctcaaatattggattagttattgac |
37839988 |
T |
|
| Q |
232 |
aaggacaaaccgtctttaagccaaggagcacctaaaaaaggtatattagctcctgagcctatacgccaccgcacaccctgttttaccataattttagcac |
331 |
Q |
| |
|
|| |||| || ||||||||||||||| | ||||||| |||||| |||||||||||||| |||| ||| || | |||||||| |||| |||||| |||| |
|
|
| T |
37839989 |
aaagacaggccatctttaagccaaggaacgcctaaaagaggtatgttagctcctgagcccatacaccattgcgcgccctgtttcaccacaatttttgcac |
37840088 |
T |
|
| Q |
332 |
taaaaatactcctccaaacattacttggagtatgtccaatactagaccccataaaattagtgtta-ggaaaaattgtgccttaaacaaacgagaaacaaa |
430 |
Q |
| |
|
|||| ||||||| |||||||| ||||||| |||||| ||| | ||||| ||||||| | |||| ||||| || |||| |||||||| | |||||||| |
|
|
| T |
37840089 |
taaatatactccgccaaacataacttggattatgtctaatgttggacccaataaaatcaatgttttggaaatatcgtgctttaaacaagctagaaacaat |
37840188 |
T |
|
| Q |
431 |
gctagtgggatcaatttgaaatctccaaccttgtttatctaacatagccacattaaaagatgtcaactcattaaagctcatacctccnnnnnnnttatga |
530 |
Q |
| |
|
||| || ||||| ||||||||| | |||||||||| |||||||||| |||||||||||| ||||| || |||| ||||||||||| ||||| |
|
|
| T |
37840189 |
actattgagatcagtttgaaatcccaaaccttgtttgtctaacatagacacattaaaagaggtcaaatccataaacctcatacctccaaaattgttatgg |
37840288 |
T |
|
| Q |
531 |
acgaaaaacttttcccaagacatccagtgtaacccacgccgcgtgctatcaccatgaccccaccaaaaagcattgataattttttcaacagaatcaatta |
630 |
Q |
| |
|
||| | ||||||||| |||||||||||||||||||||| ||||| || |||||||| |||||||||| || || || ||||| |||| || ||||| || |
|
|
| T |
37840289 |
acggacaacttttccaaagacatccagtgtaacccacgtcgcgtattaccaccatgatcccaccaaaaggcgtttatcattttctcaatagcatcaacta |
37840388 |
T |
|
| Q |
631 |
gcttagaagggagcaaaaatacactcataatataagatggaatagtctggagtaccgatttgatcattacccctctacaagccatggataagcacttgct |
730 |
Q |
| |
|
|||||| | ||||||||||||||||||| ||||||||| | |||| || ||||| |||||| |||||||| || | ||| |||||||||||||||| |
|
|
| T |
37840389 |
gcttagtatggagcaaaaatacactcatgatataagataggatagacttgagtatcgatttaatcattacatctttgtcagctttggataagcacttgct |
37840488 |
T |
|
| Q |
731 |
actccaactattaattgtgtgccaaatacggtccttaatgaa |
772 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||||||||||| |
|
|
| T |
37840489 |
gctccaactattaattttgtgtcaaatgtggtccttaatgaa |
37840530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 29 - 443
Target Start/End: Original strand, 9632630 - 9633046
Alignment:
| Q |
29 |
gaatacttaccactcttctcccctttccaaattaatttatcttccgtaacaagaggttgtagtggtgtgttaagaataagttgagcaacgggcatatcaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| |||| ||| ||| || | ||||| |
|
|
| T |
9632630 |
gaatacttaccactcttctcccctttccaaattaatttatcttccgtaacaagaggatgaagtagtgtgttaaggataaattgtgcagtggacgcatcaa |
9632729 |
T |
|
| Q |
129 |
atatattataaattaagggagctttacaaaccttcaaatcatgatcaataaaatcacacaatttcaccagcat-ataggctcaaatattgaactagtcgt |
227 |
Q |
| |
|
| | ||||||||||||||||||||| ||||||||||| | | ||||||||| ||||| |||||| || ||| | ||||||||||||| | ||||||| |
|
|
| T |
9632730 |
agagattataaattaagggagctttccaaaccttcaatttttaatcaataaagtcacataatttctcctgcaacagaggctcaaatattagattagtcgt |
9632829 |
T |
|
| Q |
228 |
gaacaaggacaaaccgtctttaagccaaggagcacctaaaaaaggtatattagctcctgagcctatacgccaccgcacaccctgttttaccataatttta |
327 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| | |||| |||||||| ||||||| |
|
|
| T |
9632830 |
ggacaaggaaaaaccgtctttaagccaaggagcacctaaaaaaagtatattagctcctgagcctatacgctaccgcgcgccctattttaccacaatttta |
9632929 |
T |
|
| Q |
328 |
gcactaaaaatactcctccaaacattacttggagtatgtccaatactagaccccataaaattagtgttaggaaaa-attgtgccttaaacaaacgagaaa |
426 |
Q |
| |
|
||||||||||||||| |||||||| ||||| | |||||| ||||||||||||||||||| | ||||||||||| | |||||||||||||||||||||| |
|
|
| T |
9632930 |
gcactaaaaatactctgccaaacataacttgaattatgtctgatactagaccccataaaatcaatgttaggaaaataatgtgccttaaacaaacgagaaa |
9633029 |
T |
|
| Q |
427 |
caaagctagtgggatca |
443 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
9633030 |
caaggctagtgggatca |
9633046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 30 - 319
Target Start/End: Complemental strand, 46077843 - 46077554
Alignment:
| Q |
30 |
aatacttaccactcttctcccctttccaaattaatttatcttccgtaacaagaggttgtagtggtgtgttaagaataagttgagcaacgggcatatcaaa |
129 |
Q |
| |
|
|||||||| |||||| ||||| |||||||| ||||||||||| | ||||||||||||||| ||||||||||| |||||||| ||| |||| |||||| |
|
|
| T |
46077843 |
aatacttaacactctcctcccttttccaaaataatttatctttcacaacaagaggttgtagcggtgtgttaaggataagttgtgcattgggcgcatcaaa |
46077744 |
T |
|
| Q |
130 |
tatattataaattaagggagctttacaaaccttcaaatcatgatcaataaaatcacacaatttcaccagc-atataggctcaaatattgaactagtcgtg |
228 |
Q |
| |
|
|| ||||||||||| ||||||||| ||||||||||| || || ||||| |||||||||||||||||| || | | ||||||||||||| | |||||||| |
|
|
| T |
46077743 |
taaattataaattaggggagctttccaaaccttcaagtcctggtcaat-aaatcacacaatttcacctgcaacaaaggctcaaatatttgattagtcgtg |
46077645 |
T |
|
| Q |
229 |
aacaaggacaaaccgtctttaagccaaggagcacctaaaaaaggtatattagctcctgagcctatacgccaccgcacaccctgttttacca |
319 |
Q |
| |
|
||||||| ||| |||| |||||| ||||| ||||| ||||||||||| |||||||| |||||||| ||| || | ||||||||||||| |
|
|
| T |
46077644 |
gacaaggataaatcgtccttaagctaaggaacaccttaaaaaggtatagtagctcctaagcctataaatcactgcgcgccctgttttacca |
46077554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 654 - 784
Target Start/End: Original strand, 23060985 - 23061115
Alignment:
| Q |
654 |
ctcataatataagatggaatagtctggagtaccgatttgatcattacccctctacaagccatggataagcacttgctactccaactattaattgtgtgcc |
753 |
Q |
| |
|
||||||||||||||||| || | || | ||||||||||||||||||| ||| || | | |||| || ||||| ||||||||||| |||||| |||||| |
|
|
| T |
23060985 |
ctcataatataagatgggattgattgtaataccgatttgatcattacctctcgaccaactttggacaaacacttactactccaactgttaattttgtgcc |
23061084 |
T |
|
| Q |
754 |
aaatacggtccttaatgaaaccaaatgtcgc |
784 |
Q |
| |
|
||||||||||||| || |||||||| ||||| |
|
|
| T |
23061085 |
aaatacggtccttgataaaaccaaaagtcgc |
23061115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 17284491 - 17284560
Alignment:
| Q |
30 |
aatacttaccactcttctcccctttccaaattaatttatcttccgtaacaagaggttgtagtggtgtgtt |
99 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||| |||||||||| ||||||||||||||| |||||||| |
|
|
| T |
17284491 |
aatacttaccactcttatcccctttctaaattagcttatcttccgaaacaagaggttgtagcggtgtgtt |
17284560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 651 - 788
Target Start/End: Original strand, 43990897 - 43991034
Alignment:
| Q |
651 |
acactcataatataagatggaatagtctggagtaccgatttgatcattacccctctacaagccatggataagcacttgctactccaactattaattgtgt |
750 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||| |||| || |||| || | || | ||||||||| ||||||| || ||| ||| |
|
|
| T |
43990897 |
acactcataatataagaaggaatagactggagtaccgatttcatcaacacttctctttcggctttagaaaggcacttgctgctccaacagtttattttgt |
43990996 |
T |
|
| Q |
751 |
gccaaatacggtccttaatgaaaccaaatgtcgcttct |
788 |
Q |
| |
|
||||||| |||||||||||||| ||||| || |||||| |
|
|
| T |
43990997 |
gccaaatgcggtccttaatgaagccaaaagttgcttct |
43991034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 3e-81; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 3602226 - 3602611
Alignment:
| Q |
18 |
cacttcgaacggaatacttaccactcttctcccctttccaaattaatttatcttccgtaacaagaggttgtagtggtgtgttaagaataagttgagcaac |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||| |||| ||||| ||||||| ||| |
|
|
| T |
3602226 |
cacttcgaacaaaatacttaccactcttcttccctttccaaattaatttatcttctgtaataagaggttgtagcagtgtattaaggataagttctgcagt |
3602325 |
T |
|
| Q |
118 |
gggcatatcaaatatattataaattaagggagctttacaaaccttcaaatcatgatcaataaaatcacacaatttcacc-agcatataggctcaaatatt |
216 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| ||| |||| ||| |||| ||||||||||||||||| ||||||||| | | | ||||||||||||| |
|
|
| T |
3602326 |
gggcgcatcaaatagattataaattaagggagtttttcaaatctttgaatcttgatcaataaaatcacataatttcacctacaacaaaggctcaaatatt |
3602425 |
T |
|
| Q |
217 |
gaactagtcgtgaacaaggacaaaccgtctttaagccaaggagcacctaaaaaaggtatattagctcctgagcctatacgccaccgcacaccctgtttta |
316 |
Q |
| |
|
|| |||||||| | |||||||| || |||||||| |||||||||| |||||| |||||||||||||||||||||||||||| | | | || ||||||| |
|
|
| T |
3602426 |
aaattagtcgtggagaaggacaatccatctttaagtcaaggagcacacaaaaaatgtatattagctcctgagcctatacgccatcacgcgccttgtttta |
3602525 |
T |
|
| Q |
317 |
ccataattttagcactaaaaatactcctccaaacattacttggagtatgtccaatactagaccccataaaattagtgttaggaaaa |
402 |
Q |
| |
|
|| |||||||||||| | |||||||||||||||| ||||| |||||||||||||| |||| || |||| |||||| |||||| |
|
|
| T |
3602526 |
ccccaattttagcactcgagatactcctccaaacataacttgtcttatgtccaatactatacccaatcaaatcagtgttgggaaaa |
3602611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 49 - 378
Target Start/End: Complemental strand, 15231611 - 15231282
Alignment:
| Q |
49 |
ccctttccaaattaatttatcttccgtaacaagaggttgtagtggtgtgttaagaataagttgagcaacgggcatatcaaatatattataaattaaggga |
148 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| | || | |||||||| |||||||| ||| ||| | || |||||| | ||| |||| | ||| |
|
|
| T |
15231611 |
ccctttccaaatcattttatcttccgtaacaagtgtctgaattggtgtgtcaagaataacttgtgcagtgtgcgcatcaaacaagttacaaataaggggc |
15231512 |
T |
|
| Q |
149 |
gctttacaaaccttcaaatcatgatcaataaaatcacacaatttcaccagcat-ataggctcaaatattgaactagtcgtgaacaaggacaaaccgtctt |
247 |
Q |
| |
|
||||| || | |||||| || || |||||||| |||| ||||||||| |||| | ||||||||| |||| | |||| ||| | || |||||||| || | |
|
|
| T |
15231511 |
gctttccacatcttcaattcttggtcaataaactcacttaatttcacctgcatcaaaggctcaaaaattggattagttgtggataaagacaaaccatcat |
15231412 |
T |
|
| Q |
248 |
taagccaaggagcacctaaaaaaggtatattagctcctgagcctatacgccaccgcacaccctgttttaccataattttagcactaaaaatactcctcca |
347 |
Q |
| |
|
||| ||||||||| |||||||| ||||||||| | || | ||||| | ||| ||| ||| ||||| |||| ||||||||||||||||||||| ||||| |
|
|
| T |
15231411 |
taatccaaggagcgcctaaaaa-ggtatattaacaccaaaacctattctccatcgcgtaccttgtttcaccacaattttagcactaaaaatacttctcca |
15231313 |
T |
|
| Q |
348 |
aacattacttggagtatgtccaatactagac |
378 |
Q |
| |
|
||||| |||||| |||| | |||| ||||| |
|
|
| T |
15231312 |
aacatagcttggattatgcctaatattagac |
15231282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 411 - 781
Target Start/End: Complemental strand, 27876411 - 27876042
Alignment:
| Q |
411 |
ttaaacaaacgagaaacaaagctagtgggatcaatttgaaatctccaaccttgtttatctaacatagccacattaaaagatgtcaactcattaaagctca |
510 |
Q |
| |
|
||||| || ||| |||||| |||| | | ||||||||| || ||||| || ||||| |||||||||||||||||||||| ||||| || ||||||| || |
|
|
| T |
27876411 |
ttaaataatcgacaaacaaggctactagaatcaatttggaacctccatccctgtttccctaacatagccacattaaaagaagtcaaatccttaaagccca |
27876312 |
T |
|
| Q |
511 |
tacctccnnnnnnnttatgaacgaaaaacttttcccaagacatccagtgtaacccacgccgcgtgctatcaccatgaccccaccaaaaagcattgataat |
610 |
Q |
| |
|
||||||| |||||||| | ||| ||| | |||||||||| ||||| | || ||| | || | | || ||||||||||||| ||| || || |
|
|
| T |
27876311 |
tacctccaaaaaatttatgaacagacaaccttttctaagacatccaatgtaatctgcgacgcatattaccgtcgtggccccaccaaaaagaattaatcat |
27876212 |
T |
|
| Q |
611 |
tttttcaacagaatcaattagcttagaagggagcaaaaatacactcataatataagatggaatagtctggagtaccgatttgatcattacccctctacaa |
710 |
Q |
| |
|
|||||| | | ||||| |||||| || || ||||| | ||||||||||||||||| || | || ||||||||||||||||||||| | | || | |
|
|
| T |
27876211 |
tttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatgga-tgtagtaccgatttgatcattacctcacgacca |
27876113 |
T |
|
| Q |
711 |
gccatggataagcacttgctactccaactattaattgtgtgccaaatacggtccttaatgaaaccaaatgt |
781 |
Q |
| |
|
||| |||| || || ||||| ||| ||||||||||| ||||||||||||| ||||| || || |||||||| |
|
|
| T |
27876112 |
gccttggacaaacatttgctgctcaaactattaattttgtgccaaatacgatcctttataaagccaaatgt |
27876042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 651 - 796
Target Start/End: Complemental strand, 39285344 - 39285199
Alignment:
| Q |
651 |
acactcataatataagatggaatagtctggagtaccgatttgatcattacccctct-acaagccatggataagcacttgctactccaactattaattgtg |
749 |
Q |
| |
|
|||||| |||||||| |||| |||| |||||||||||||| ||||| ||| |||| |||| | ||||||| |||||||||||||||||||||||| || |
|
|
| T |
39285344 |
acactcgtaatataatatgggatagattggagtaccgatttaatcatgacctctctgacaa-ctttggataaacacttgctactccaactattaattttg |
39285246 |
T |
|
| Q |
750 |
tgccaaatacggtccttaatgaaaccaaatgtcgcttctctgcttct |
796 |
Q |
| |
|
|||||||| | ||||| ||||| ||||| |||| ||| ||||||| |
|
|
| T |
39285245 |
tgccaaatgagatccttgatgaaggcaaatatcgcctctttgcttct |
39285199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 410 - 488
Target Start/End: Complemental strand, 39285567 - 39285489
Alignment:
| Q |
410 |
cttaaacaaacgagaaacaaagctagtgggatcaatttgaaatctccaaccttgtttatctaacatagccacattaaaa |
488 |
Q |
| |
|
||||||||| |||||||||| | |||||| | |||||||||| |||| ||||||| |||||||||||||||||||| |
|
|
| T |
39285567 |
cttaaacaagcgagaaacaagattgttgggattagtttgaaatcttcaacattgtttacctaacatagccacattaaaa |
39285489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 25396904 - 25396973
Alignment:
| Q |
30 |
aatacttaccactcttctcccctttccaaattaatttatcttccgtaacaagaggttgtagtggtgtgtt |
99 |
Q |
| |
|
||||||||||| ||| ||| |||||||||||||| |||| || || ||||||||||| ||||||||||| |
|
|
| T |
25396904 |
aatacttaccatccttttccgctttccaaattaatctatcctcagtgacaagaggttggagtggtgtgtt |
25396973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 146; Significance: 2e-76; HSPs: 2)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 159 - 496
Target Start/End: Original strand, 14768 - 15110
Alignment:
| Q |
159 |
ccttcaaatcatgatcaataaaatcacacaatttcacc-agcatataggctcaaatattgaactagtcgtgaacaaggacaaaccgtctttaagccaag- |
256 |
Q |
| |
|
|||||||||| | |||||||||||| || ||||||||| | | | ||||| |||||||| | ||||| || | |||| || || |||||||| |||| |
|
|
| T |
14768 |
ccttcaaatctt-atcaataaaatcgcataatttcacctataacaaaggcttaaatattggattagtcatggaataggataacccatctttaagtcaagc |
14866 |
T |
|
| Q |
257 |
-gagcacctaaaaaaggtatattagctcctgagcctatacgccaccgcacaccctgttttaccataattttagcactaaaaatactcctccaaacattac |
355 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
14867 |
ggagcacccaaaaaaggtatattagcttctgagcctatacgtcaccgtgcaccctgttttaccataattttagcactaaaaatactcttccaaacataaa |
14966 |
T |
|
| Q |
356 |
ttggagtatgtccaatactagaccccataaaattagtgttaggaaaa-attgtgccttaaacaaacgagaaacaaagctagtgggatcaatttgaaatct |
454 |
Q |
| |
|
||||| |||||||||| |||||||| ||||||||||||| | ||||| || ||||||||||||||| |||||||| ||||||||||||| |||||||||| |
|
|
| T |
14967 |
ttggattatgtccaatgctagacccaataaaattagtgtgacgaaaatatcgtgccttaaacaaacaagaaacaaggctagtgggatcagtttgaaatct |
15066 |
T |
|
| Q |
455 |
ccaaccttgtttatcta--acatagccacattaaaagatgtcaa |
496 |
Q |
| |
|
||||| ||||||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
15067 |
ccaacgttgtttacctaacacacagccacattaaaagatgtcaa |
15110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 563 - 795
Target Start/End: Original strand, 15121 - 15356
Alignment:
| Q |
563 |
cccacgccgcgtgctatcaccatgaccccaccaaaaagcattgataatttttt--caacagaatcaattagctt-agaagggagcaaaaatacactcata |
659 |
Q |
| |
|
||||| ||| ||| || |||||||||||||||||||||||||||| ||||||| ||| | ||||| |||||| | ||||||||||||||||||||| |
|
|
| T |
15121 |
cccacaccgtgtgttaccaccatgaccccaccaaaaagcattgatcattttttttcaatatcatcaactagctttatctgggagcaaaaatacactcata |
15220 |
T |
|
| Q |
660 |
atataagatggaatagtctggagtaccgatttgatcattacccctctacaagccatggataagcacttgctactccaactattaattgtgtgccaaatac |
759 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15221 |
atataagatggaatatactggagtactgatttgatcattacctctctactagccttggataagcacttgctactccaactattaattttgtgccaaatac |
15320 |
T |
|
| Q |
760 |
ggtccttaatgaaaccaaatgtcgcttctctgcttc |
795 |
Q |
| |
|
||||||||||||||||||||| || ||| |||||| |
|
|
| T |
15321 |
agtccttaatgaaaccaaatgttgcctctttgcttc |
15356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 3e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 173 - 766
Target Start/End: Complemental strand, 42435958 - 42435363
Alignment:
| Q |
173 |
tcaataaaatcacacaatttcaccagcat-ataggctcaaatattgaactagtcgtgaacaaggacaaaccgtctttaagccaaggagcacctaaaaaag |
271 |
Q |
| |
|
||||||||||| || ||||||||| |||| | ||||||||| |||| |||| ||| | || |||| | | || || ||||||||||| |||| ||||| |
|
|
| T |
42435958 |
tcaataaaatcgcaaaatttcacctgcatcaaaggctcaaaaattgggttagttgtggataaagacatatcatcctttagccaaggagcgcctagaaaag |
42435859 |
T |
|
| Q |
272 |
gtatattagctcctgagcctatacgccaccgcacaccctgttttaccataattttagcactaaaaatactcctccaaacattacttggagtatgtccaat |
371 |
Q |
| |
|
|||||||| | | || ||||| | ||| ||| ||||||||||||| | |||||| |||||||||| |||| ||||||||| |||| | |||| ||||| |
|
|
| T |
42435858 |
gtatattatcagcagaacctatccaccaacgcgcaccctgttttacaacaattttggcactaaaaacactcttccaaacatagcttgaattatgcccaat |
42435759 |
T |
|
| Q |
372 |
actagaccccataaaattagtgttaggaaaa-attgtgccttaaacaaacgagaaacaaagctagtgggatcaatttgaaatctccaaccttgtttatct |
470 |
Q |
| |
|
| ||||||| || |||| | ||||||||| || |||||||| ||| ||||||||| |||| | |||| |||| || |||||||||||||| || |
|
|
| T |
42435758 |
attagacccaatgaaatcggaattaggaaaatatccagccttaaataaaggagaaacaagactagaagaatcagtttggaacctccaaccttgttttcct |
42435659 |
T |
|
| Q |
471 |
aacatagccacattaaaagatgtcaactcattaaagctcatacctccnnnnnnnttatgaacgaaaaacttttcccaagacatccagtgtaacccacgcc |
570 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| | ||| | ||| |||||||| || || |||||||||||||||| |||||| | | | |
|
|
| T |
42435658 |
aacatagccacattaaaagatgtcagatccttaaaccccatgcatccaaaattcttatgaacaaataatctttcccaagacatccaatgtaactctctgc |
42435559 |
T |
|
| Q |
571 |
gcgtgctatcaccatgaccccaccaaaaagcattgataattttttcaacagaatcaattagcttagaagggagcaaaaatacactcataatataagatgg |
670 |
Q |
| |
|
|| | || || ||| |||||||||||| ||||| || |||||||||| | ||||| || ||| || || |||| |||||||||||||||||||| |
|
|
| T |
42435558 |
gcatattaccatcattaccccaccaaaaggcatttatcattttttcaattgcatcaactaatttatttggcagtaaaaggacactcataatataagatgg |
42435459 |
T |
|
| Q |
671 |
aatagtctggagtaccgatttgatcattacccctctacaagccatggataagcacttgctactccaactattaattgtgtgccaaatacggtcctt |
766 |
Q |
| |
|
|||| || ||||| || || ||||| ||| |||| | ||| || |||| ||||||| ||||||||||| ||| ||||| ||||||||||||| |
|
|
| T |
42435458 |
gataggttgtagtactgacttaatcatgacctctctgctagctttgaataaacacttgcggctccaactattgattttgtgctaaatacggtcctt |
42435363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 729 - 778
Target Start/End: Original strand, 1018449 - 1018498
Alignment:
| Q |
729 |
ctactccaactattaattgtgtgccaaatacggtccttaatgaaaccaaa |
778 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||| || |||||||| |
|
|
| T |
1018449 |
ctactccaactgttaattttgtgccaaatacggtccttgataaaaccaaa |
1018498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 4e-34; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 469 - 784
Target Start/End: Complemental strand, 30303521 - 30303206
Alignment:
| Q |
469 |
ctaacatagccacattaaaagatgtcaactcattaaagctcatacctccnnnnnnnttatgaacgaaaaacttttcccaagacatccagtgtaacccacg |
568 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||||||||||| ||||| |||||||| | || ||||||| |||||||| ||||| ||||| |
|
|
| T |
30303521 |
ctaacatagccacattaaaagaggtcaaatccttaaagctcatgcctccaaaaaatttatgaacagacaatctttcccaggacatccaatgtaatccacg |
30303422 |
T |
|
| Q |
569 |
ccgcgtgctatcaccatgaccccaccaaaaagcattgataattttttcaacagaatcaattagcttagaagggagcaaaaatacactcataatataagat |
668 |
Q |
| |
|
||| | || | ||||| |||||||| |||||||| || | |||||| | | ||||| |||||| || || ||||| | ||||||||||||||| |
|
|
| T |
30303421 |
acgcatattaccgccatggccccaccagaaagcattaatcaatttttctattgcatcaacaagcttatttggaagtaaaaaaatgctcataatataagat |
30303322 |
T |
|
| Q |
669 |
ggaatagtctggagtaccgatttgatcattacccctctacaagccatggataagcacttgctactccaactattaattgtgtgccaaatacggtccttaa |
768 |
Q |
| |
|
|| || | || ||||||||||||||||||||| ||| || ||| |||| || ||||| ||||||||||| |||||| ||||||||||||||||||| | |
|
|
| T |
30303321 |
gggattgattgtagtaccgatttgatcattacctctcgaccagctttggacaaacacttactactccaactgttaattttgtgccaaatacggtccttga |
30303222 |
T |
|
| Q |
769 |
tgaaaccaaatgtcgc |
784 |
Q |
| |
|
| |||||||| ||||| |
|
|
| T |
30303221 |
taaaaccaaaagtcgc |
30303206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 8704500 - 8704575
Alignment:
| Q |
30 |
aatacttaccactcttctcccctttccaaattaatttatcttccgtaacaagaggttgtagtggtgtgttaagaat |
105 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | |||||||||||| || || || || || || ||||||||||| |
|
|
| T |
8704500 |
aatacttaccactcttttcccctttccaaatcattttatcttccgttactagtggctgaagcggcgtgttaagaat |
8704575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 29983563 - 29983488
Alignment:
| Q |
24 |
gaacggaatacttaccactcttctcccctttccaaattaatttatcttccgtaacaagaggttgtagtggtgtgtt |
99 |
Q |
| |
|
|||| ||||| |||||| |||| ||| |||||| ||| ||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
29983563 |
gaacagaatatttaccattcttttccactttcctaatcaatttatcttcagtgacaagaggttggagtggtgtgtt |
29983488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 470 - 516
Target Start/End: Complemental strand, 24869838 - 24869792
Alignment:
| Q |
470 |
taacatagccacattaaaagatgtcaactcattaaagctcatacctc |
516 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||| |||||||||| |
|
|
| T |
24869838 |
taacatagccacattaaaagaagtcaaatccttaaaactcatacctc |
24869792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 176 - 784
Target Start/End: Original strand, 28591116 - 28591726
Alignment:
| Q |
176 |
ataaaatcacacaatttcaccagcat-ataggctcaaatattgaactagtcgtgaacaaggacaaaccgtctttaagccaaggagcacctaaaaaaggta |
274 |
Q |
| |
|
||||| ||||| ||||||||| |||| | ||||||||| || | | |||| ||| | || |||||||| || || |||||||| || || || ||||||| |
|
|
| T |
28591116 |
ataaagtcacataatttcacctgcatcaaaggctcaaaaataggattagttgtggataaagacaaaccatccttgagccaaggggctcccaagaaaggta |
28591215 |
T |
|
| Q |
275 |
tattagctcctgagcctatacgccaccgcacaccctgttttaccataattttagcactaaaaatactcctccaaacattacttggagtatgtccaatact |
374 |
Q |
| |
|
| || | ||||| || || ||||| || |||||||||| |||| |||||| ||||||||||| || | |||||||| ||||| |||| ||||| | |
|
|
| T |
28591216 |
tgttgacccctgaaccgatccgccatcgtgcaccctgtttcaccacaatttttgcactaaaaatgcttcgccaaacatagcttgggttatgcccaatttt |
28591315 |
T |
|
| Q |
375 |
agaccccataaaattagtgttaggaaaaattgt-gccttaaacaaacgagaaacaaagctagtgggatcaatttgaaatctccaaccttgtttatctaac |
473 |
Q |
| |
|
||||| ||||||| || |||||||| | | |||||||| || ||| |||||| || | | || |||| || ||||| || ||||| ||||| |
|
|
| T |
28591316 |
ggacccaataaaatcagaattaggaaagtatctagccttaaataatcgacaaacaagactgctagactctgtttggaacctccatccctgtttccctaac |
28591415 |
T |
|
| Q |
474 |
atagccacattaaaagatgtcaactcattaaagctcatacctccnnnnnnnttatgaacgaaaaacttttcccaagacatccagtgtaacccacgccgcg |
573 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||| ||| ||||| |||||||| | || ||||||| |||||||| ||||| ||||| ||| |
|
|
| T |
28591416 |
atagccacattaaaagaggtcaaatccttaaagcccatgcctccaaaaaatttatgaacagacaatctttcccaggacatccaatgtaatccacgacgca |
28591515 |
T |
|
| Q |
574 |
tgctatcaccatgaccccaccaaaaagcattgataattttttcaacagaatcaattagcttagaagggagcaaaaatacactcataatataagatggaat |
673 |
Q |
| |
|
| || | |||| |||||||| |||||||| || | |||||| | | ||||| |||||| || || ||||| | ||||||||||||||||| || |
|
|
| T |
28591516 |
tattaccgtcatggccccaccagaaagcattaatcaatttttctattgcatcaacaagcttatttggaagtaaaaaaatgctcataatataagatgggat |
28591615 |
T |
|
| Q |
674 |
agtctggagtaccgatttgatcattacccctctacaagccatggataagcacttgctactccaactattaattgtgtgccaaatacggtccttaatgaaa |
773 |
Q |
| |
|
| || ||||||||||||||||||||| ||| || ||| |||| || ||||| ||||||||||| |||||| ||||||||||||||||||| || ||| |
|
|
| T |
28591616 |
tgattgtagtaccgatttgatcattacctctcgaccagctttggacaaacacttactactccaactgttaattttgtgccaaatacggtccttgataaaa |
28591715 |
T |
|
| Q |
774 |
ccaaatgtcgc |
784 |
Q |
| |
|
||||| ||||| |
|
|
| T |
28591716 |
ccaaaagtcgc |
28591726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 250 - 781
Target Start/End: Complemental strand, 32894892 - 32894360
Alignment:
| Q |
250 |
agccaaggagcacctaaaaaaggtatattagctcctgagcctatacgccaccgcacaccctgttttaccataattttagcactaaaaatactcctccaaa |
349 |
Q |
| |
|
|||||||| || ||||| ||||||||||| || ||||| || || ||||| | ||||||||||||||| ||||| || ||||||||||| | ||||| |
|
|
| T |
32894892 |
agccaaggggcgcctaagaaaggtatattggcccctgaaccaatccgccatcttgcaccctgttttaccactatttttgcgctaaaaatacttcgccaaa |
32894793 |
T |
|
| Q |
350 |
cattacttggagtatgtccaatactagaccccataaaattagtgttaggaaaaattgt-gccttaaacaaacgagaaacaaagctagtgggatcaatttg |
448 |
Q |
| |
|
|| ||||| |||| || || | ||||| ||||||| || |||||||| | | || ||||| || ||| |||||| |||| | | |||| |||| |
|
|
| T |
32894792 |
tatagcttgggttatgcccgattttggacccaataaaatcagaagtaggaaaatatctagctttaaataatcgacaaacaaggctactagaatcagtttg |
32894693 |
T |
|
| Q |
449 |
aaatctccaaccttgtttatctaacatagccacattaaaagatgtcaactcattaaagctcatacctccnnnnnnnttatgaacgaaaaacttttcccaa |
548 |
Q |
| |
|
|| ||||| || ||||| |||||||||||||||||||||| ||||| || ||||||| ||||||||| |||||||| | ||| |||||||| |
|
|
| T |
32894692 |
gaacctccatccctgtttccctaacatagccacattaaaagaagtcaaatccttaaagcacatacctccaaaaaatttatgaacagacaacctttcccaa |
32894593 |
T |
|
| Q |
549 |
gacatccagtgtaacccacgccgcgtgctatcaccatgaccccaccaaaaagcattgataattttttcaacagaatcaattagcttagaagggagcaaaa |
648 |
Q |
| |
|
|||||||| ||||| || || ||| | || || | || ||||||||||||||||| || |||||||| | | ||||| |||||| || || | || |
|
|
| T |
32894592 |
gacatccaatgtaatccgcgacgcatattaccatcgtggccccaccaaaaagcattaatcattttttctattgcatcaacaagcttatttggaagtagaa |
32894493 |
T |
|
| Q |
649 |
atacactcataatataagatggaatagtctggagtaccgatttgatcattacccctctacaagccatggataagcacttgctactccaactattaattgt |
748 |
Q |
| |
|
| | |||||||||||||||| || | || ||||||||||||||||||||| | || |||| | | || || || || ||||||||||||||| | |
|
|
| T |
32894492 |
agatgctcataatataagatgagatggattgtagtaccgatttgatcattacctcatgaccagccttttacaaacatttactgctccaactattaatttt |
32894393 |
T |
|
| Q |
749 |
gtgccaaatacggtccttaatgaaaccaaatgt |
781 |
Q |
| |
|
|||||||||||||||||| || || |||||||| |
|
|
| T |
32894392 |
gtgccaaatacggtcctttataaagccaaatgt |
32894360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 588 - 782
Target Start/End: Original strand, 13107739 - 13107933
Alignment:
| Q |
588 |
ccccaccaaaaagcattgataattttttcaacagaatcaattagcttagaagggagcaaaaatacactcataatataagatggaatagtctggagtaccg |
687 |
Q |
| |
|
||||||||||||||||| || |||||||| | | ||||| |||||| || |||||||| | ||||||||||||||||| ||| || |||| || |
|
|
| T |
13107739 |
ccccaccaaaaagcattaatcattttttctattgcatcaacaagcttatttggaagcaaaaagatgctcataatataagatgggataacttgtagtatcg |
13107838 |
T |
|
| Q |
688 |
atttgatcattacccctc-tacaagccatggataagcacttgctactccaactattaattgtgtgccaaatacggtccttaatgaaaccaaatgtc |
782 |
Q |
| |
|
|| | || |||||| ||| ||| |||| |||| ||||||||||| ||| ||||||||||| |||| |||||||||||||| || |||||||||||| |
|
|
| T |
13107839 |
atataattattacctctcgtac-agccttggacaagcacttgctgctctaactattaattttgtgtcaaatacggtcctttataaaaccaaatgtc |
13107933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 654 - 766
Target Start/End: Original strand, 25905987 - 25906099
Alignment:
| Q |
654 |
ctcataatataagatggaatagtctggagtaccgatttgatcattacccctctacaagccatggataagcacttgctactccaactattaattgtgtgcc |
753 |
Q |
| |
|
|||||||||||||||| || | || ||||||||||||||||||||| ||| || ||| |||| || ||||| ||||||||| | |||||| ||| || |
|
|
| T |
25905987 |
ctcataatataagatgagattgattgtagtaccgatttgatcattacctctcgaccagctttggacaaacacttactactccaattgttaattttgtacc |
25906086 |
T |
|
| Q |
754 |
aaatacggtcctt |
766 |
Q |
| |
|
||||||||||||| |
|
|
| T |
25906087 |
aaatacggtcctt |
25906099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 329
Target Start/End: Complemental strand, 941582 - 941492
Alignment:
| Q |
239 |
aaccgtctttaagccaaggagcacctaaaaaaggtatattagctcctgagcctatacgccaccgcacaccctgttttaccataattttagc |
329 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||| ||| |||| || || || || | ||| | ||||||||||| |||||||||||||| |
|
|
| T |
941582 |
aaccgtctttaagccacggagcaccgaacaaaggaatactagcaccagaaccaatcctccatctaacaccctgtttaaccataattttagc |
941492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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