View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11703_high_32 (Length: 434)

Name: NF11703_high_32
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11703_high_32
NF11703_high_32
[»] chr6 (7 HSPs)
chr6 (24-389)||(12844123-12844491)
chr6 (24-218)||(19294548-19294744)
chr6 (44-181)||(34013722-34013859)
chr6 (44-181)||(34010991-34011128)
chr6 (24-175)||(14494228-14494382)
chr6 (24-181)||(17540236-17540392)
chr6 (74-180)||(31414682-31414786)
[»] chr2 (8 HSPs)
chr2 (24-218)||(26576282-26576478)
chr2 (24-175)||(34409372-34409525)
chr2 (27-201)||(9929874-9930050)
chr2 (24-218)||(13039098-13039293)
chr2 (24-150)||(32200656-32200784)
chr2 (42-175)||(17651490-17651622)
chr2 (152-218)||(4747817-4747883)
chr2 (169-218)||(32200610-32200659)
[»] chr4 (9 HSPs)
chr4 (24-207)||(54305838-54306024)
chr4 (24-172)||(45612230-45612380)
chr4 (25-180)||(40288939-40289096)
chr4 (44-181)||(55680921-55681059)
chr4 (83-220)||(3420075-3420212)
chr4 (25-214)||(29987890-29988080)
chr4 (51-107)||(2641388-2641443)
chr4 (57-119)||(18198660-18198722)
chr4 (41-118)||(17733014-17733090)
[»] chr7 (8 HSPs)
chr7 (27-181)||(22291031-22291187)
chr7 (78-220)||(44572275-44572417)
chr7 (24-139)||(45215847-45215964)
chr7 (40-135)||(11816771-11816867)
chr7 (308-377)||(36565868-36565940)
chr7 (25-139)||(27616534-27616652)
chr7 (40-124)||(10678528-10678612)
chr7 (163-218)||(45215790-45215845)
[»] chr8 (8 HSPs)
chr8 (28-150)||(15131780-15131905)
chr8 (50-218)||(28421288-28421445)
chr8 (95-218)||(2874848-2874972)
chr8 (96-174)||(18393355-18393434)
chr8 (69-150)||(37855276-37855356)
chr8 (78-137)||(18602899-18602960)
chr8 (169-218)||(15131734-15131783)
chr8 (165-217)||(14469735-14469787)
[»] chr1 (4 HSPs)
chr1 (24-173)||(32741066-32741214)
chr1 (40-113)||(23432107-23432180)
chr1 (40-218)||(48632323-48632509)
chr1 (41-118)||(18488447-18488523)
[»] chr3 (6 HSPs)
chr3 (27-119)||(10516013-10516107)
chr3 (94-173)||(30121035-30121114)
chr3 (25-75)||(26565520-26565572)
chr3 (40-74)||(10657329-10657363)
chr3 (141-218)||(25092126-25092203)
chr3 (42-106)||(11410922-11410985)
[»] scaffold0002 (1 HSPs)
scaffold0002 (57-119)||(289075-289137)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 24 - 389
Target Start/End: Original strand, 12844123 - 12844491
Alignment:
Q  24 ttgttttagatatttgtg--agttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaacca 121  Q
    ||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||||||||||| ||||||||||||||    
T  12844123 ttgttttagatatctgtgtgagttgtctgacacagctcgtatgagtgttatataagtgtcagacatcgatcttaggagtgtcgaagtaaagaaaaaacca 12844222  T
Q  122 attatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttcatagttt 221  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||    
T  12844223 attatttaggacaccggttcgacacgtgtcgtacaggtgttataggagtgtcggacaccgcgacatgcctagttctagaggtgtccgtgcttcatagttt 12844322  T
Q  222 acgaaagctattttggttgaatattttatgggcagagttcag-ggtgtgcttatagctgttttcatatctcaaaatcgtgtttcaaaggtttatcatcaa 320  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12844323 acgaaagttattttggttgaatattttatgggcagagttcagaggtgtgcttatagctgttttcatgtctcaaaatcgtgtttcaaaggtttatcatcaa 12844422  T
Q  321 agacatgtttggctgaattggaatttcggcttttcattgttgttatcaacaacccaccttatattccat 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12844423 agacatgtttggctgaattggaatttcggcttttcattgttgttatcaacaacccaccttatattccat 12844491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 24 - 218
Target Start/End: Original strand, 19294548 - 19294744
Alignment:
Q  24 ttgttttagatatttgtgag--ttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaacca 121  Q
    |||||||||||||||||| |  ||||| ||||| |||||||||||||||||| |  |||||||||| |||| || |||||||||| ||||||||||| ||    
T  19294548 ttgttttagatatttgtgtgacttgtccgacacggctcgtatgagtgttatacaggtgtcggacaccgatcgtaagagtgtcgaagtaaagaaaaaaaca 19294647  T
Q  122 attatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttcatag 218  Q
    ||||||| ||||||||||||||||||||| |||| ||||| | ||||||||||| |||||| ||| ||||| | |||||||||||  ||||||||||    
T  19294648 attattttggacaccggttcgacacgtgtcgtacgggtgtcacaggagtgtcggacaccgcgacacgcctaatcctagaggtgtcggtgcttcatag 19294744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 44 - 181
Target Start/End: Original strand, 34013722 - 34013859
Alignment:
Q  44 ttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcga 143  Q
    ||||||||||| ||||||||||||||||||||  ||||||||||  ||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  34013722 ttgtctgacacggctcgtatgagtgttatataggtgtcggacaccaatcgtaggagtgtcgaagtaaagaaaaaaacaattatttaggacaccggttcga 34013821  T
Q  144 cacgtgttgtacaggtgttataggagtgtcggtcaccg 181  Q
    ||||||| ||||| |||| || |||||||||| |||||    
T  34013822 cacgtgtcgtacaagtgtcattggagtgtcggacaccg 34013859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 44 - 181
Target Start/End: Complemental strand, 34011128 - 34010991
Alignment:
Q  44 ttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcga 143  Q
    ||||||||||| ||||||||||||||||||||  ||||||||||  ||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  34011128 ttgtctgacacggctcgtatgagtgttatataggtgtcggacaccaatcgtaggagtgtcgaagtaaagaaaaaaacaattatttaggacaccggttcga 34011029  T
Q  144 cacgtgttgtacaggtgttataggagtgtcggtcaccg 181  Q
    ||||||| | ||| |||| || |||||||||| |||||    
T  34011028 cacgtgtcgcacaagtgtcattggagtgtcggacaccg 34010991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 14494382 - 14494228
Alignment:
Q  24 ttgttttagatatttgtg--agttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaa-aaaacc 120  Q
    |||||| |||||||||||  ||||||| ||||| |||||||| |||||||||||  |||||||||| |||  ||||||||||||| ||||||| |||| |    
T  14494382 ttgtttaagatatttgtgtgagttgtccgacacggctcgtattagtgttatataggtgtcggacaccgattgtaggagtgtcgaagtaaagaaaaaaaac 14494283  T
Q  121 aattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcgg 175  Q
    ||||||||| ||||| |||||||||||||| |||| ||||| |||||||||||||    
T  14494282 aattatttaagacactggttcgacacgtgtcgtacgggtgtcataggagtgtcgg 14494228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 17540236 - 17540392
Alignment:
Q  24 ttgttttagatatttgt--gagttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaacca 121  Q
    |||||||||||||||||  |||||||| ||||| | || |||||||||||||||  |||| || || ||||  ||||| ||| || ||||||||||        
T  17540236 ttgttttagatatttgtctgagttgtccgacacggttcatatgagtgttatataggtgtcagataccgatcgaaggagagtcaaagtaaagaaaaa---c 17540332  T
Q  122 attatttaggacaccggttcgacacgtgttgtac-aggtgttataggagtgtcggtcaccg 181  Q
    ||||||| ||||||||||||||| ||||||||||  ||||| ||||||||||||| |||||    
T  17540333 attattt-ggacaccggttcgactcgtgttgtacgcggtgtcataggagtgtcggacaccg 17540392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 180
Target Start/End: Original strand, 31414682 - 31414786
Alignment:
Q  74 taactgtcggacactgatcttaggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtc 173  Q
    ||||| || ||||| |||| ||||||||| ||| |||||||||||| |||||||||||||| | ||| ||||| || |||||  |||| |||||||| ||    
T  31414682 taactatctgacaccgatcgtaggagtgt-gaagtaaagaaaaaac-aattatttaggacatcagtttgacacatggtgtacgagtgtgataggagtatc 31414779  T
Q  174 ggtcacc 180  Q
    || ||||    
T  31414780 ggacacc 31414786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 24 - 218
Target Start/End: Original strand, 26576282 - 26576478
Alignment:
Q  24 ttgttttagatatttgt--gagttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaacca 121  Q
    |||||||| ||||||||  |||||||| ||||| ||||||||||||||||||||  ||| ||| || |||| |||||||||| || ||||||||||| ||    
T  26576282 ttgttttaaatatttgtttgagttgtccgacacggctcgtatgagtgttatataggtgttggagaccgatcgtaggagtgtcaaagtaaagaaaaaatca 26576381  T
Q  122 attatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttcatag 218  Q
    |||||||| |||||||||||||||||||| |||| ||||| ||||||||||||| |||||| ||| | ||||| |||||||||||| ||||||||||    
T  26576382 attatttaagacaccggttcgacacgtgtcgtacgggtgtcataggagtgtcggacaccgcgacacgtctagtcctagaggtgtccgtgcttcatag 26576478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 34409525 - 34409372
Alignment:
Q  24 ttgttttagatatttgt--gagttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaacca 121  Q
    |||||||||||| ||||  |||||||   ||||| |||||||||||||||||||  |||||||||| |||| |||| |||||||| ||||||||||| ||    
T  34409525 ttgttttagatagttgtttgagttgttcaacacaactcgtatgagtgttatataggtgtcggacaccgatcataggcgtgtcgaagtaaagaaaaaaaca 34409426  T
Q  122 attatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcgg 175  Q
    ||||||||||||||||||| ||||||||| |||| ||| | |||||||||||||    
T  34409425 attatttaggacaccggtttgacacgtgtcgtacgggtatcataggagtgtcgg 34409372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 9929874 - 9930050
Alignment:
Q  27 ttttagatatttgt--gagttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaaccaatt 124  Q
    ||||||||||||||  ||||||| |||||| ||| ||||||||||||||||  |||||||||| |||| ||||| | | ||| ||||||||||| ||||     
T  9929874 ttttagatatttgtcagagttgtttgacacggctggtatgagtgttatataggtgtcggacaccgatcgtaggaatcttgaagtaaagaaaaaaacaatc 9929973  T
Q  125 atttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgcctagttctagag 201  Q
    ||||||||||||| || ||||||| | ||||  |||| ||||||||||||| ||| || |||||||||||| |||||    
T  9929974 atttaggacaccgttttgacacgtttcgtacgagtgtcataggagtgtcggacacagccacatgcctagttttagag 9930050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 24 - 218
Target Start/End: Original strand, 13039098 - 13039293
Alignment:
Q  24 ttgttttagatatttgt--gagttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaacca 121  Q
    |||||||||||||||||  ||| ||||||||||| ||| ||||||||||||| |  ||||||||||  ||| ||||| ||| ||| ||||||||||| ||    
T  13039098 ttgttttagatatttgtctgagctgtctgacacaactcatatgagtgttataaatgtgtcggacaccaatcgtagga-tgtagaagtaaagaaaaaatca 13039196  T
Q  122 attatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttcatag 218  Q
    |||||||| |||||||| |||||| |||| |||| ||  | ||| |||||| || |||||| ||| ||||||| ||| |||||||| ||||||||||    
T  13039197 attatttaagacaccggatcgacatgtgtcgtacggggttcatatgagtgttggacaccgcgacacgcctagtcctataggtgtccgtgcttcatag 13039293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 32200784 - 32200656
Alignment:
Q  24 ttgttttagatatttgt--gagttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaacca 121  Q
    ||||||||||||||| |  |||||||| ||||| |||||||||| |||||||||  ||| || ||| |||| ||||||||||||| ||||||||||| ||    
T  32200784 ttgttttagatatttttctgagttgtccgacacggctcgtatgactgttatataggtgttgggcaccgatcgtaggagtgtcgaagtaaagaaaaaatca 32200685  T
Q  122 attatttaggacaccggttcgacacgtgt 150  Q
    ||||||||||||||| |||||||||||||    
T  32200684 attatttaggacaccagttcgacacgtgt 32200656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 175
Target Start/End: Original strand, 17651490 - 17651622
Alignment:
Q  42 agttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttc 141  Q
    ||||||| |||||  ||| ||| |||||||||||| |||||||||| | ||  |||||||||||| ||||||| ||| ||| ||||||||||||  ||||    
T  17651490 agttgtccgacacgcctcatataagtgttatataagtgtcggacaccggtcaaaggagtgtcgaagtaaagaagaaaacaactatttaggacacttgttc 17651589  T
Q  142 gacacgtgttgtacaggtgttataggagtgtcgg 175  Q
    |||| |||||||||| |||| ||| |||||||||    
T  17651590 gaca-gtgttgtacaagtgtcataagagtgtcgg 17651622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 4747883 - 4747817
Alignment:
Q  152 gtacaggtgttataggagtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttcatag 218  Q
    ||||| |||| |||||| |||||| |||| | ||| ||||||| |||||||||||| ||||||||||    
T  4747883 gtacaagtgtcataggattgtcggacaccacgacacgcctagtcctagaggtgtccgtgcttcatag 4747817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 32200659 - 32200610
Alignment:
Q  169 gtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttcatag 218  Q
    ||||||| |||||| ||| ||||||| |||||||||||| ||||||||||    
T  32200659 gtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcatag 32200610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 24 - 207
Target Start/End: Original strand, 54305838 - 54306024
Alignment:
Q  24 ttgttttagatatttgtg--agttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaaga-aaaaacc 120  Q
    ||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||  ||| |||||| |||  ||||||||||||| |||||| ||||| |    
T  54305838 ttgttttagatatttgtgtgagttgtctgacacggctcgtatgagtgttgtataggtgttggacaccgattgtaggagtgtcgaagtaaagacaaaaaac 54305937  T
Q  121 aattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgcctagttctagaggtgtcc 207  Q
    |||||||||||||| ||||||||||||||| |||| ||||| ||||||||||||| |||||  ||| ||||||| ||||||||||||    
T  54305938 aattatttaggacatcggttcgacacgtgtcgtacgggtgtcataggagtgtcggacaccgtgacacgcctagtcctagaggtgtcc 54306024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 45612380 - 45612230
Alignment:
Q  24 ttgttttagatatttgt--gagttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaacca 121  Q
    |||||||||||||||||  |||||||| |||||  ||||||||||||||||| |  |||||||||  |||| ||||||||||||  ||||||||||| ||    
T  45612380 ttgttttagatatttgtttgagttgtccgacacgactcgtatgagtgttatacaggtgtcggacatcgatcgtaggagtgtcgacgtaaagaaaaaaaca 45612281  T
Q  122 attatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgt 172  Q
    ||||||||||||||||||| ||||||||| |||| ||||| ||||||||||    
T  45612280 attatttaggacaccggtttgacacgtgtcgtacgggtgtcataggagtgt 45612230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 25 - 180
Target Start/End: Complemental strand, 40289096 - 40288939
Alignment:
Q  25 tgttttagatatttgt--gagttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaaccaa 122  Q
    ||||||||||||||||  |||||||| ||||   |||||||||||||||||||  |||||||||| |||| ||||||||||||| ||||||||||  |||    
T  40289096 tgttttagatatttgtttgagttgtccgacatgactcgtatgagtgttatataggtgtcggacaccgatcgtaggagtgtcgaagtaaagaaaaacacaa 40288997  T
Q  123 ttatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcacc 180  Q
    |||||||| ||||||||||||||||| | ||||  ||||||||||| |||||| ||||    
T  40288996 ttatttagaacaccggttcgacacgtatcgtacgagtgttataggaatgtcggacacc 40288939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 44 - 181
Target Start/End: Original strand, 55680921 - 55681059
Alignment:
Q  44 ttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaag-aaaaaaccaattatttaggacaccggttcg 142  Q
    |||| ||||||||||||||||||||||| |||  |||||||||| |||| ||||||||||||| ||||| |||||| ||||||||||||||| |||||||    
T  55680921 ttgtttgacacagctcgtatgagtgttacataggtgtcggacaccgatcgtaggagtgtcgaagtaaagaaaaaaaacaattatttaggacagcggttcg 55681020  T
Q  143 acacgtgttgtacaggtgttataggagtgtcggtcaccg 181  Q
    ||| |||| ||||| |||| ||||||||||||| |||||    
T  55681021 acatgtgtcgtacaagtgtcataggagtgtcggacaccg 55681059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 83 - 220
Target Start/End: Original strand, 3420075 - 3420212
Alignment:
Q  83 gacactgatcttaggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccgc 182  Q
    ||||| |||| ||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||| ||||   ||| ||| ||||||| | ||||||    
T  3420075 gacaccgatcgtaggagtgtcgaagtaaagaaaaaaacaattatttaggacaccgattcgacacgtgtcgtacgattgtcataagagtgtcagacaccgc 3420174  T
Q  183 aacatgcctagttctagaggtgtccatgcttcatagtt 220  Q
    |||| |||||||  ||||||||||| ||||||||||||    
T  3420175 aacacgcctagtcttagaggtgtccgtgcttcatagtt 3420212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 29987890 - 29988080
Alignment:
Q  25 tgttttagatatttgt--gagttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaaccaa 122  Q
    ||||||||||||||||  ||||||||  ||||| ||||||||||||||||| |   ||| ||||| |||| ||||||||||||| ||||||||||| |||    
T  29987890 tgttttagatatttgtttgagttgtccaacacatctcgtatgagtgttatacagg-gtcagacaccgatcgtaggagtgtcgaagtaaagaaaaaaacaa 29987988  T
Q  123 ttatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttc 214  Q
    ||||||| || |||| ||| |||| | |||||| | ||| ||||||| |||   |||| | ||| |||||||||||||||||||| ||||||    
T  29987989 ttatttacgataccgattcaacacatattgtacggatgtcataggagcgtcaaacaccacgacacgcctagttctagaggtgtccgtgcttc 29988080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 2641388 - 2641443
Alignment:
Q  51 acacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaa 107  Q
    |||||||||||| ||||||||||||  | ||||||||||||| ||||||||||||||    
T  2641388 acacagctcgtacgagtgttatataggtatcggacactgatc-taggagtgtcgaaa 2641443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 18198722 - 18198660
Alignment:
Q  57 ctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaac 119  Q
    |||||||||||||||||||  |||||||||| | | | |||||||||| | ||||||||||||    
T  18198722 ctcgtatgagtgttatataggtgtcggacaccggtgtaaggagtgtcggagtaaagaaaaaac 18198660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 17733014 - 17733090
Alignment:
Q  41 gagttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaa 118  Q
    |||||||| ||||| |||||||||| ||||||| |  ||||| |||| | || ||||||||||||| |||||||||||    
T  17733014 gagttgtccgacacggctcgtatgaatgttatagaggtgtcg-acaccggtcctaggagtgtcgaattaaagaaaaaa 17733090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 22291031 - 22291187
Alignment:
Q  27 ttttagatatttgtg--agttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaaccaatt 124  Q
    ||||||||| |||||  |||||||  |||| ||||||||||||| ||||||  ||||||| || |||| ||||||||||||| ||||||||||| |||||    
T  22291031 ttttagataattgtgcgagttgtcctacacggctcgtatgagtggtatatacgtgtcggataccgatcgtaggagtgtcgaagtaaagaaaaaaacaatt 22291130  T
Q  125 atttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccg 181  Q
    ||||||||||||||||| |||||||| |||| ||||| ||||||||||||| |||||    
T  22291131 atttaggacaccggttcaacacgtgtggtacgggtgtcataggagtgtcggacaccg 22291187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 78 - 220
Target Start/End: Complemental strand, 44572417 - 44572275
Alignment:
Q  78 tgtcggacactgatcttaggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtc 177  Q
    ||||| |||| |||| ||||||||||||| |||||||||||  || ||||||||||||||||||||||||||| ||||  |||| ||||||||||||| |    
T  44572417 tgtcgaacaccgatcgtaggagtgtcgaagtaaagaaaaaaataagtatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggac 44572318  T
Q  178 accgcaacatgcctagttctagaggtgtccatgcttcatagtt 220  Q
    ||||| ||| |||||||  ||||||||||| ||||||||||||    
T  44572317 accgcgacacgcctagtcgtagaggtgtccgtgcttcatagtt 44572275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 45215964 - 45215847
Alignment:
Q  24 ttgttttagatatttg--tgagttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaacca 121  Q
    ||||||||||||||||  || |||||| ||||| |||||||||||||||| |||  |||||||||| |||| |||||||| |||| ||||||||||| ||    
T  45215964 ttgttttagatatttgactgggttgtccgacacggctcgtatgagtgttacataggtgtcggacaccgatcgtaggagtgacgaagtaaagaaaaaaaca 45215865  T
Q  122 attatttaggacaccggt 139  Q
    ||||||||||||||||||    
T  45215864 attatttaggacaccggt 45215847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 135
Target Start/End: Complemental strand, 11816867 - 11816771
Alignment:
Q  40 tgagttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaa-aaaaccaattatttaggacac 135  Q
    ||||||||| |||||| ||| ||| ||||| |||||| |||| ||||| |||||||||||||||||||||||||| ||||  | |||||||||||||    
T  11816867 tgagttgtccgacacacctcatataagtgtcatataagtgtcagacacggatcttaggagtgtcgaaataaagaagaaaataacttatttaggacac 11816771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 377
Target Start/End: Complemental strand, 36565940 - 36565868
Alignment:
Q  308 ggtttatcatcaaagacatgtttggc--tgaattggaatttc-ggcttttcattgttgttatcaacaacccac 377  Q
    ||||||||||||||||| ||||||||  |||||||||||||| || ||| ||| |||||||||||||||||||    
T  36565940 ggtttatcatcaaagacgtgtttggctgtgaattggaatttcaggttttccatggttgttatcaacaacccac 36565868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 27616534 - 27616652
Alignment:
Q  25 tgttttagatatttgt--gagttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaaccaa 122  Q
    ||||| ||||||||||  |||||||| ||||| ||| |||||||||| |||||  || ||||||| | || ||||||||||||  ||||||| ||| |||    
T  27616534 tgtttcagatatttgtctgagttgtccgacacggcttgtatgagtgtcatataggtgccggacaccgttcctaggagtgtcgatgtaaagaagaaaacaa 27616633  T
Q  123 --ttatttaggacaccggt 139  Q
      |||||||||||||||||    
T  27616634 atttatttaggacaccggt 27616652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 10678528 - 10678612
Alignment:
Q  40 tgagttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaaccaatt 124  Q
    ||||||||| ||||| | ||||||||||||||||||  ||||||||||   || ||||||||| ||| |||| |||||| |||||    
T  10678528 tgagttgtcagacacggttcgtatgagtgttatataggtgtcggacaccagtcctaggagtgttgaattaaataaaaaaacaatt 10678612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 45215845 - 45215790
Alignment:
Q  163 ataggagtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttcatag 218  Q
    ||||||||||||| |||||| ||| ||||||| || ||||||||| ||||||||||    
T  45215845 ataggagtgtcggacaccgcgacacgcctagtcctggaggtgtccgtgcttcatag 45215790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 28 - 150
Target Start/End: Complemental strand, 15131905 - 15131780
Alignment:
Q  28 tttagatatttgt--gagttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaa-aaaaccaatt 124  Q
    |||||||||||||  |||||||  ||||| |||| |||||||||||||||  |||||||||| | || ||||||||||||| ||||||| |||| |||||    
T  15131905 tttagatatttgtctgagttgttcgacactgctcatatgagtgttatataggtgtcggacaccggtcgtaggagtgtcgaagtaaagaaaaaaaacaatt 15131806  T
Q  125 atttaggacaccggttcgacacgtgt 150  Q
    ||| ||||||||||||||||||||||    
T  15131805 attcaggacaccggttcgacacgtgt 15131780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 50 - 218
Target Start/End: Original strand, 28421288 - 28421445
Alignment:
Q  50 gacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtg 149  Q
    ||||||||||||||||||||||||||  |||||||||| |||| ||||| ||||||| ||||||||||| |||||||||| |||   |||||||||        
T  28421288 gacacagctcgtatgagtgttatataggtgtcggacaccgatcgtaggaatgtcgaagtaaagaaaaaatcaattatttatgaccttggttcgaca---- 28421383  T
Q  150 ttgtacaggtgttataggagtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttcatag 218  Q
       ||    ||| |||| ||| |||| |||||||||||| |||||| ||||||||||||| ||||||||    
T  28421384 ---ta----tgtcatagcagtatcggacaccgcaacatgtctagttttagaggtgtccatacttcatag 28421445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 218
Target Start/End: Complemental strand, 2874972 - 2874848
Alignment:
Q  95 aggagtgtcgaaataaagaa-aaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgcctag 193  Q
    ||||||||| |||||||||| ||||||| |||||||| ||||  ||  |||||||||||||   |||| ||||| |||||||  ||||| |||||| ||     
T  2874972 aggagtgtcaaaataaagaagaaaaccatttatttagtacacttgtctgacacgtgttgtatgagtgtcataggcgtgtcggagaccgcgacatgcgtaa 2874873  T
Q  194 ttctagaggtgtccatgcttcatag 218  Q
    | |||||||||||| ||||||||||    
T  2874872 tcctagaggtgtccgtgcttcatag 2874848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 174
Target Start/End: Complemental strand, 18393434 - 18393355
Alignment:
Q  96 ggagtgtcgaaataaagaa-aaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcg 174  Q
    ||||||||||| ||||||  ||||| |||||||||||||||  ||||||||||||| ||||  |||| ||||||||||||    
T  18393434 ggagtgtcgaagtaaagatgaaaacaaattatttaggacactagttcgacacgtgtcgtacgagtgtcataggagtgtcg 18393355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 37855276 - 37855356
Alignment:
Q  69 ttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgt 150  Q
    |||||||  |||||| |||  ||| ||||||||| ||| |||||||||||| |||||||||||||| ||||| |||||||||    
T  37855276 ttatataggtgtcggtcaccaatcgtaggagtgttgaagtaaagaaaaaac-aattatttaggacaacggtttgacacgtgt 37855356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 18602960 - 18602899
Alignment:
Q  78 tgtcggacactgatcttaggagtgtcgaaataaagaaaaaaccaa--ttatttaggacaccg 137  Q
    |||||||||| | ||||||||||||||||  |||||||||| |||  |||||||||||||||    
T  18602960 tgtcggacaccggtcttaggagtgtcgaatcaaagaaaaaaacaattttatttaggacaccg 18602899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 15131783 - 15131734
Alignment:
Q  169 gtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttcatag 218  Q
    ||||||| |||||| ||| ||||||| |||||||||||| ||||||||||    
T  15131783 gtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcatag 15131734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 14469787 - 14469735
Alignment:
Q  165 aggagtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttcata 217  Q
    ||||||||||| |||| | |||  |||||| ||||||||||||||||||||||    
T  14469787 aggagtgtcggacaccacgacacacctagtgctagaggtgtccatgcttcata 14469735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 32741066 - 32741214
Alignment:
Q  24 ttgttttagatatttg--tgagttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaacca 121  Q
    ||||||||||||||||  |||||||| |||||| ||||| || |||||||||||  |||||||||| |||| ||||||||||||| |||| || ||  ||    
T  32741066 ttgttttagatatttgcctgagttgtttgacacggctcgcataagtgttatatag-tgtcggacaccgatcgtaggagtgtcgaagtaaaaaataa--ca 32741162  T
Q  122 attatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtc 173  Q
    |||||||||||| | |||||||||||||| ||||  |||| |||||||||||    
T  32741163 attatttaggacgctggttcgacacgtgtcgtacgagtgtcataggagtgtc 32741214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 23432107 - 23432180
Alignment:
Q  40 tgagttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaaga 113  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||||| | || |||||||| |||| ||||||    
T  23432107 tgagttgtccgacacggctcgtatgagtgttatataagtgtcggacaccggtcctaggagtgccgaattaaaga 23432180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 48632509 - 48632323
Alignment:
Q  40 tgagttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaaccaatt--atttaggacaccg 137  Q
    ||||||||||||||  |||||| |||||||||||    |||||||||| | ||| ||||||||||||  |||||||||| |||||  |||||||||||||    
T  48632509 tgagttgtctgacatggctcgtgtgagtgttatagg--tgtcggacaccggtct-aggagtgtcgaagcaaagaaaaaaacaattttatttaggacaccg 48632413  T
Q  138 gtt---------cgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttcatag 218  Q
    ||          |||| |||||  |||  |||| || |||||||||| |||||| ||| ||||||| |||||||||||| ||||||||||    
T  48632412 gtcttagttgtccgacgcgtgtcatacgagtgtcatgggagtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcatag 48632323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 18488447 - 18488523
Alignment:
Q  41 gagttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaa 118  Q
    |||||||| ||||  |||||||||| |||||||||  ||||| |||| | || ||||||||||||| |||||||||||    
T  18488447 gagttgtccgacatggctcgtatgaatgttatataggtgtcg-acaccggtcctaggagtgtcgaattaaagaaaaaa 18488523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 10516107 - 10516013
Alignment:
Q  27 ttttagatatttg--tgagttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaac 119  Q
    |||||||||||||  |||||||||||||||  ||||||||||| ||||| |  |||||||||| || | ||| |||||||||  |||||||||||    
T  10516107 ttttagatatttgcatgagttgtctgacacgactcgtatgagtattatacaggtgtcggacaccgaccctagaagtgtcgaatcaaagaaaaaac 10516013  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 30121035 - 30121114
Alignment:
Q  94 taggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtc 173  Q
    ||||||||| ||| ||||| ||||| ||||||||||||||| || | |||||||||| |||| ||| | |||||||||||    
T  30121035 taggagtgtggaagtaaagcaaaaaacaattatttaggacatcgatccgacacgtgtcgtacgggtatcataggagtgtc 30121114  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 26565520 - 26565572
Alignment:
Q  25 tgttttagatatttgt--gagttgtctgacacagctcgtatgagtgttatata 75  Q
    ||||||||||||||||  |||||||| ||||| ||||||||||||||||||||    
T  26565520 tgttttagatatttgtctgagttgtccgacacggctcgtatgagtgttatata 26565572  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 10657363 - 10657329
Alignment:
Q  40 tgagttgtctgacacagctcgtatgagtgttatat 74  Q
    ||||||||||||||| |||||||||||||||||||    
T  10657363 tgagttgtctgacacggctcgtatgagtgttatat 10657329  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 25092203 - 25092126
Alignment:
Q  141 cgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttcatag 218  Q
    |||||||||||||||  |||| |||| |||||| | ||| || |||  |||||| |||||||||||| ||||||||||    
T  25092203 cgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacacacctagtcctagaggtgtccgtgcttcatag 25092126  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 11410922 - 11410985
Alignment:
Q  42 agttgtctgacacagctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaa 106  Q
    ||||||||||||  ||||||||||||||||||||  |||| ||||| | || |||||||||||||    
T  11410922 agttgtctgacatggctcgtatgagtgttatataggtgtc-gacaccggtcctaggagtgtcgaa 11410985  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 289075 - 289137
Alignment:
Q  57 ctcgtatgagtgttatataactgtcggacactgatcttaggagtgtcgaaataaagaaaaaac 119  Q
    |||||||||||||||||||  |||||||||| | | | |||||||||| | ||||||||||||    
T  289075 ctcgtatgagtgttatataggtgtcggacaccggtgtaaggagtgtcggagtaaagaaaaaac 289137  T

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