View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_high_36 (Length: 418)
Name: NF11703_high_36
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 34335811 - 34336199
Alignment:
| Q |
19 |
atctagaacttggtcgtgatgcatcagtgtacattgtgttctgccctcaagggtctaatggtgccactgaagctccaagggcaaagcttccaaggcttaa |
118 |
Q |
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| T |
34335811 |
atctagaacttggtcgtgatgcatcagtgtacattgtgttctgccctcaagggtctaatggtgccactgaagctccaagggcaaagcttccaaggcttaa |
34335910 |
T |
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| Q |
119 |
tgctacctcagaacatcttgtagcatatgaatacaagtaaatgcatgaatttattcttcacttctattagatattacaaaatgtataaaatcgtcaagga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34335911 |
tgctacctcagaacatcttgtagcatatgaatacaagtaaatgcatgaatttattcttcacttctattagatattacaaaatgtataaaatcgtcaagga |
34336010 |
T |
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| Q |
219 |
ttacatgccgggaagagtcttcttgatcaagcatcgcagaatggaatcctgaagtagtagccaccatatactaaacttttgtgttttgtaatgatctacn |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34336011 |
ttacatgccgggaagagtcttcttgatcaagcatcgcaaaatggaatcctgaagtagtagccaccatatactaaacttttgtgttttgtaatgatctaca |
34336110 |
T |
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| Q |
319 |
nnnnnnnttatatttatcaggaggattaaacttcataaatccaaacattttccattgattttgcagatttagaccaataaaacacaggt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34336111 |
aaaaaaattatatttatcaggaggattaaacttcataaatccaaacattttccattgattttgcagatttagaccaataaaacacaggt |
34336199 |
T |
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