View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11703_high_40 (Length: 390)
Name: NF11703_high_40
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_40 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 5639086 - 5639322
Alignment:
| Q |
1 |
acatgaattaatgaggacaagctcaacttgaaccatcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaa |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5639086 |
acatgaattaacgaggacaagctcaacttgaaccatcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaa |
5639185 |
T |
|
| Q |
101 |
aggattgtccccagagcgtccttgaattgctaaacccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5639186 |
aggattgtccccagagcgtccttgaagtgctaaacccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacctg |
5639285 |
T |
|
| Q |
201 |
cattaaagattgaaacattgtgtgctatgttaaacat |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5639286 |
cattaaagattgaaacattgtgtgctatgttaaacat |
5639322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 299 - 377
Target Start/End: Original strand, 5639318 - 5639396
Alignment:
| Q |
299 |
aacatctttagtctttgtacatttagcaacctttcttaaaaaattgttagatcaataagaaatattacacctaaaaagt |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
5639318 |
aacatctttagtctttgtacatttagcaacctttcttaaacaattgttagaccaataagaaatatcacacctaaaaagt |
5639396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 31938826 - 31939202
Alignment:
| Q |
1 |
acatgaattaatgaggacaagctcaacttgaaccatcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaa |
100 |
Q |
| |
|
||||| || |||||||||||||||| ||||| |||||||||||||||||| |||||| | |||| ||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
31938826 |
acatggatgaatgaggacaagctcagcttgagccatcatcatcaactacatctaaagaatgggctagacaacttgggtacttaaaggggagaattgtcaa |
31938925 |
T |
|
| Q |
101 |
aggattgtccccagagcgtccttgaattgctaaacccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacctg |
200 |
Q |
| |
|
|||| |||| ||||| ||||| ||||||||||||| ||||||||||| |||||||| |||||||||||||||| || ||||||||||| || |||||| |
|
|
| T |
31938926 |
aggactgtcatcagagagtcctagaattgctaaacctaatgtgtatccaagggcaagggccacaggaacagcaactgcgtttccaacttgaatatacctg |
31939025 |
T |
|
| Q |
201 |
cattaaagattgaaac-attgtgtgctatgttaaacataataatgggggaaaatattataacgaaagatgaaaacatgac-caaacttaactcaaactat |
298 |
Q |
| |
|
|||||||||| ||||| |||| ||| ||| || |||||||||||| |||| ||||||| ||||||| | || ||| | | |||| | |||||||||| |
|
|
| T |
31939026 |
cattaaagatggaaactattgagtgtcatgctatacataataatggaaaaaaaaattataatgaaagat-agaatatgtcactaactaatctcaaactat |
31939124 |
T |
|
| Q |
299 |
aacatctttagtctttgtacatttagcaacctttcttaaaaaattgttagatcaataagaaatattacacctaaaaagt |
377 |
Q |
| |
|
||| |||||||| || |||||||||||| |||||| | | ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31939125 |
aactactttagtc-ttctacatttagcaatctttctaaccatattgttagaccaataagaaatattacacctaaaaagt |
31939202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 13535476 - 13535667
Alignment:
| Q |
13 |
gaggacaagctcaacttgaaccatcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaaaggattgtcccc |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| | |||||| | |||||||||||||||| |||||||| ||||||||||||||||| ||||| | |
|
|
| T |
13535476 |
gaggacaagctcaacttgaatcatcatcatcaactgtatctaaagaaggggcaagacaacttgggtacttaaatgggagagttgtcaaaggcttgtcatc |
13535575 |
T |
|
| Q |
113 |
agagcgtccttgaattgctaaacccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacctgcatt |
204 |
Q |
| |
|
||| ||||| |||| || ||||| ||||||||||| |||||||| | || |||||||| ||||||||||||||||| | |||||||||| |
|
|
| T |
13535576 |
agaaagtcctagaatagccaaacctaatgtgtatccaagggcaagggctaccggaacagcgaccgcatttccaacttgagtatacctgcatt |
13535667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 7e-62; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 9389182 - 9389424
Alignment:
| Q |
1 |
acatgaattaatgaggacaagctcaacttgaaccatcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaa |
100 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||| |||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9389182 |
acatggattaatgaggacaagctcagcttgagccatc---atcaactacatctaaagaacgggccagacaacttgggtacttaaaggggagagttgtcaa |
9389278 |
T |
|
| Q |
101 |
aggattgtccccagagcgtccttgaattgctaaacccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacctg |
200 |
Q |
| |
|
|||| |||| ||||| ||||| ||||||||||||| ||||||||||| |||||||| |||||||||||||||| || ||||||||||| ||||||||| |
|
|
| T |
9389279 |
aggactgtcatcagagagtcctagaattgctaaacctaatgtgtatccaagggcaagggccacaggaacagcaactgcgtttccaacttgcatgtacctg |
9389378 |
T |
|
| Q |
201 |
cattaaagattgaaac-attgtgtgctatgttaaacataataatggg |
246 |
Q |
| |
|
||||||||| |||||| |||| |||| ||| | ||||||||||||| |
|
|
| T |
9389379 |
cattaaaga-tgaaactattgagtgccatgcaatacataataatggg |
9389424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 19810269 - 19810089
Alignment:
| Q |
20 |
agctcaacttgaaccatcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaaaggattgtccccagagcgt |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||| | ||| |||||||| ||||||| ||||| | ||||| || || || |
|
|
| T |
19810269 |
agctcaacttgaattatcatcatcaactacagctaaaggacgggctagacagcatggctacttaaacaggagagtcgtcaacgacttgtcgtcaaagagt |
19810170 |
T |
|
| Q |
120 |
ccttgaat-tgctaaacccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacct |
199 |
Q |
| |
|
|||||||| ||||| || ||||||| ||||||| |||| ||| ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
19810169 |
ccttgaataggctaatcctaatgtgtgtccgaggtcaagggccattggaacagtaaccgcatttccaacttacatgtacct |
19810089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 9389495 - 9389556
Alignment:
| Q |
316 |
tacatttagcaacctttcttaaaaaattgttagatcaataagaaatattacacctaaaaagt |
377 |
Q |
| |
|
|||||||||||| |||||| | | | ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9389495 |
tacatttagcaatctttctaaccataatgttagaccaataagaaatattacacctaaaaagt |
9389556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 1336995 - 1337241
Alignment:
| Q |
1 |
acatgaattaatgaggacaagctcaacttgaaccatcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaa |
100 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| |||||||| || ||||||||||||||||||||||| |
|
|
| T |
1336995 |
acatggattaatgaggacaagatcaacttgaaccatcatcattaactacatctaaaggacgggctagacaactagggtacttaaaggggagagttgtcaa |
1337094 |
T |
|
| Q |
101 |
aggattgtccccagagcgtccttgaattgctaaacccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacctg |
200 |
Q |
| |
|
|||| ||| | ||| ||||| ||||||| ||||| ||||||||||| |||||||| | |||||||||||||| || ||||||||||| ||||||||| |
|
|
| T |
1337095 |
aggaccgtcatcggagtgtcctagaattgccaaacctaatgtgtatccaagggcaagggcaacaggaacagcaactgcgtttccaacttgcatgtacctg |
1337194 |
T |
|
| Q |
201 |
--cattaaagattgaaacattgtgtgctatgttaaacataataatgg |
245 |
Q |
| |
|
|||||||||| ||| |||| |||| ||| || |||||||||||| |
|
|
| T |
1337195 |
cacattaaagatggaactattgagtgccatgctatacataataatgg |
1337241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 375
Target Start/End: Original strand, 1337287 - 1337374
Alignment:
| Q |
287 |
aactcaaactataacatctttagtctttgtacatttagcaacctttcttaaaaaattgttagatcaataagaaatattacacctaaaaa |
375 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||| |||||| | | ||| |||| ||||||||||||||||||||||||| |
|
|
| T |
1337287 |
aactcaaactataactactttagtcttc-tacatttagcaatctttctaaccatattattagtccaataagaaatattacacctaaaaa |
1337374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University