View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_high_51 (Length: 349)
Name: NF11703_high_51
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_51 |
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| [»] scaffold0234 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 12699559 - 12699892
Alignment:
| Q |
1 |
acaatcaattacctgagcaactgtgttatgatatttcttgccaaagcttaaggttactctgtttccgaaggcttcaaagagtggaagcaaagctttggga |
100 |
Q |
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| T |
12699559 |
acaatcaattacctgagcaactgtgttatgatatttcttgccaaagcttaaggttactgtgtttccaaaggcttcaaagagtggaagcaaggctttggga |
12699658 |
T |
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| Q |
101 |
attttcgctctatagctcatgtaaaagatgaaacactactagaaaatttacatttgacatcagggcattcacatcagtggagaaatacttgaagggaaag |
200 |
Q |
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| T |
12699659 |
attttcgctctatagctcatgtaaaagatgaaacactactagaaaatttacatttgacatcagggctttcacatcagtggagaaatacttgaagggaaag |
12699758 |
T |
|
| Q |
201 |
aactttggagaaggttttcacatcagctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtggaact-aatgactgagggaaa |
299 |
Q |
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| T |
12699759 |
aactttggagaaggttttcacaccagctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtggaactaaatgactgagggaaa |
12699858 |
T |
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| Q |
300 |
agataaacgcgatgacaatttcgtaatattagtg |
333 |
Q |
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| T |
12699859 |
agataaacgcggtgacaatttcgtaatattagtg |
12699892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 300
Target Start/End: Complemental strand, 2598768 - 2598668
Alignment:
| Q |
200 |
gaactttggagaaggttttcacatcagctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtggaactaatgactgagggaaa |
299 |
Q |
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| T |
2598768 |
gaactttgatgaagttgttcccatcagttgaggaaatgactgaagggaaaaataaatgctaaagagttttgacatcagtggaactaatgcatgagggaaa |
2598669 |
T |
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| Q |
300 |
a |
300 |
Q |
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| T |
2598668 |
a |
2598668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 51741416 - 51741484
Alignment:
| Q |
133 |
acactactagaaaatttacatttgacatcagggcattcacatcagtggagaaatacttgaagggaaaga |
201 |
Q |
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| T |
51741416 |
acactactagaaaaaagacatttgacatcagggttttcacatcagtgcaaaaatacatgagggtaaaga |
51741484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0234 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0234
Description:
Target: scaffold0234; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 332
Target Start/End: Original strand, 5049 - 5199
Alignment:
| Q |
183 |
aaatacttgaagggaaaga-actttggagaaggttttcacatcagctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtgga |
281 |
Q |
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|||||| ||| |||||||| |||||||| |||||||||| |||| ||| |||||| || || |||| | |||| | || |||||| ||||| ||||| |
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| T |
5049 |
aaatacctgatgggaaagatactttggatgaggttttcacttcaggtgaagaaatggctgaggggaaaagtagaagcccaagagttttgacatcagtgga |
5148 |
T |
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| Q |
282 |
actaatgactgagggaaaagataaacgcgatgacaatttcgtaatattagt |
332 |
Q |
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| T |
5149 |
actaatgcatgaggggaaacataaacgcggtggcaattttgtaatattagt |
5199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 24167159 - 24167224
Alignment:
| Q |
134 |
cactactagaaaatttacatttgacatcagggcattcacatcagtggagaaatacttgaagggaaa |
199 |
Q |
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| T |
24167159 |
cactactagaaaatatacatttaacaatagggatttcacatcagtggagaaatacatgaggggaaa |
24167224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 332
Target Start/End: Complemental strand, 9809556 - 9809427
Alignment:
| Q |
203 |
ctttggagaaggttttcacatcagctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtggaactaatgactgagggaaaaga |
302 |
Q |
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||||||| |||||||| || |||| ||| |||||| || || |||| |||||| | | |||||| |||| |||||||||||| |||||| ||| | |
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| T |
9809556 |
ctttggacaaggttttgacttcaggtgaagaaatggctgaggggaaaaatagaagcccaggagttttgacataagtggaactaatgcatgaggggaaaca |
9809457 |
T |
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| Q |
303 |
taaacgcgatgacaatttcgtaatattagt |
332 |
Q |
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| T |
9809456 |
taaacgcggtggcaatttcgtaatattagt |
9809427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 31713445 - 31713489
Alignment:
| Q |
134 |
cactactagaaaatttacatttgacatcagggcattcacatcagt |
178 |
Q |
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| T |
31713445 |
cactactagaaaatatacatttgacatcagggttttcacatcagt |
31713489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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