View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_high_53 (Length: 345)
Name: NF11703_high_53
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_53 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 543412 - 543106
Alignment:
| Q |
20 |
aggggtagttattgcatatcataagtactcaatttgacggaaaagtaaacaaataacatcacgatcttaacagtaacaaatatttagacgacatctatat |
119 |
Q |
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| T |
543412 |
aggggtagttattccatatcataagtactcaaattgacggaaaagtaaacaaataacatcacgatcttaacagtaacaaatatttagacgacatctatat |
543313 |
T |
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| Q |
120 |
ctagatctataagccagttacataaatatatctgataggtttactccatgttctcgatcgaacccttatcttgggccttgttttttctttggttggtacg |
219 |
Q |
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| T |
543312 |
ctagatctataagccagttacataaatatatctgataggtttactccatgttctcgatcgaacccttatcttgggccttgttttttctttggttggtacc |
543213 |
T |
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| Q |
220 |
ttttgcaccaaattgacttgccattgacaaagaagttcatttcacctgatgttgccaaaaacaatgttcttgataatttgaaaatcactttagcacacag |
319 |
Q |
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| T |
543212 |
ttttgcaccaaattgacttgccattgacaaagaagttcatttcacctgatgttgccaaaaacaatgttcttgataatttgaaaatcactttagcacacag |
543113 |
T |
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| Q |
320 |
tgctgat |
326 |
Q |
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||||||| |
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| T |
543112 |
tgctgat |
543106 |
T |
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