View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_high_56 (Length: 339)
Name: NF11703_high_56
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_56 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 9 - 317
Target Start/End: Original strand, 7896819 - 7897127
Alignment:
| Q |
9 |
catgagccaagtcctccaccattgcattacaactcacacaattgactggacattcaacccctttagactgtaatcgagctcaggttggtaagcagcccct |
108 |
Q |
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| T |
7896819 |
catgagccaagtcctccaccattgcattacaactcacacaattgactggacattcaacccctttagactgtaattgagctctggttggtaagcagcccct |
7896918 |
T |
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| Q |
109 |
acatatgcgccaaagaaagttttgaatttttggtggagcctttaaattccatatgacattccaattgcccggaggccgcaagtgcgaaacatcaatcagc |
208 |
Q |
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| T |
7896919 |
acatacgtgccaaagaaagttttgaatttttggtggagcctttaaattccatatgacattccaattgcccggacgccgcaagtgcgaaacatcaatcagc |
7897018 |
T |
|
| Q |
209 |
tcctgtacacacaatctatacgcacttttcacagaataaattccatttttctctgctttccaaattaaattgtcagcaggtatatgaggaactaacgggg |
308 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7897019 |
tcctgtacacacaacctatacgcacttttcacagaataaattccatttttctctcctttccaaattaaattgtcagcaggtatatgaagaactaacgggg |
7897118 |
T |
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| Q |
309 |
tattcaaaa |
317 |
Q |
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||||||||| |
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| T |
7897119 |
tattcaaaa |
7897127 |
T |
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