View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_high_61 (Length: 312)
Name: NF11703_high_61
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_61 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 36571253 - 36571556
Alignment:
| Q |
1 |
gcatgctcgtcgccagcgcttccgcttcctccacctctccacaccggccaagcacatccaccatacaagcatagtgctcaaccgtcagcttcattgatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36571253 |
gcatgctcgtcgccagcgcttccgcttcctccacctctccacaccggccaagcacatccaccatacaagcatagtgctcaaccgtcagcttcattgatct |
36571352 |
T |
|
| Q |
101 |
tttccgagcaaaatacccnnnnnnncaccttgccttttgtaacatcccggacctgctacaggcagaaagcaaaccagtcaacgtgatctcatcagactca |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36571353 |
tttccgagcaaaatacccaaaaaaacaccttgccttttgtaacatcccggacctgctacaggcagaaagcaaaccagtcaacgtgatctcatcagactca |
36571452 |
T |
|
| Q |
201 |
actccttccctcaacatttctttaaaaagcaccaaagcccatgttccacatccatgctgagcacaaccaacaatcacagaattccaagacacaacattct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36571453 |
actccttccctcaacatttctttaaaaagcaccaaagcccatgttccacatccatgctgagcacaaccaacaatcacagaattccaagacacaacattct |
36571552 |
T |
|
| Q |
301 |
tctc |
304 |
Q |
| |
|
|||| |
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|
| T |
36571553 |
tctc |
36571556 |
T |
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