View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_high_63 (Length: 304)
Name: NF11703_high_63
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_63 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 2655198 - 2654929
Alignment:
| Q |
16 |
agcacagatggtagtttcttgtagtttatgttctgaattagaagatggagtaattggaaactatatggttacagaatttgtgttgtatgattttactcat |
115 |
Q |
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| T |
2655198 |
agcacagatgctagtttcttgtagtttatgttctgaattagaagatggagtaattggaaactatatggttacagaatttgtgttgtatgattttactcat |
2655099 |
T |
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| Q |
116 |
tcaagaaaaagtattataccaaagaaaaagtcttacagcaaacaagatgcttcgaaaactctgaatgcttctagccttgaaagtgctactattgttttgc |
215 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2655098 |
tcaagaaaaagtgttataccaaagaaaaagtcttacagcaaacaagatgcttcgaaaactctgaatgcttctagccttgaaagtgctgctattgttttgc |
2654999 |
T |
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| Q |
216 |
gaataccttttcataagagagaaagcttgaaatacaaaagaggtgatagaatgaaaactaaagcacattc |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2654998 |
gaataccttttcataagagagaaagcttgaaatacaaaagaggtgatagaatgaaaactaaagcacattc |
2654929 |
T |
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