View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11703_high_65 (Length: 302)
Name: NF11703_high_65
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_65 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 12361921 - 12362212
Alignment:
| Q |
1 |
gtggaagtttaattaaacttgatgcatcattcaattcatcagaattttatctaaataattcaaaaaacataaaccttgaaacaaatcttgtgcaacataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12361921 |
gtggaagtttaattaaacttgatgcatcattcaattcatcagaattttatctaaataattcaaaaaacataaaccttgaaacaaatcttgtgcaacataa |
12362020 |
T |
|
| Q |
101 |
atcattatgcaaactaacaccaatatatca---aagaagaagaagaaataataattggaatgaacaaaccatgtagtttagatgattgttacctttc-nn |
196 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12362021 |
atcattatgcaaactaacaccaatatattaaagaagaagaagaagaaataataattggaatgaacaaaccatgtagtttagatgatcgttacctttcttt |
12362120 |
T |
|
| Q |
197 |
nnnnncttttcctcttgtataagaaagtaaagctctttcaattaagatctagcttcttaagtaataataacaataataatggtagtgaaaaa |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12362121 |
tttttcttttcctcttgtataagaaagtaaagctctttcaattaagatctagcttcttaagtaataataacaataataatggtagtgaaaaa |
12362212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University