View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_high_70 (Length: 291)
Name: NF11703_high_70
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_70 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 51650352 - 51650086
Alignment:
| Q |
9 |
agcagagaggtggcgattaaggaattgcacaccatttccaattgacttgttgagagtaggacgagggaaagatgcagtaaatggttcaaagtccaactca |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51650352 |
agcagaaaggtggcgattaaggaattgcacaccatttccaattgacttgttgagagtaggacgagggaaagatgcagtaaatggttcaaagtccaactca |
51650253 |
T |
|
| Q |
109 |
agcacaaagtttccattagcactgtaataaaagtgagacagaatcagaatcattcataatttgtgtaaaaatataaccaaaacacaggtaattttactga |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
51650252 |
agcacaaagtttccattagcactgtaataaaagtgagacagaatcagaaccattcataatttgggtaaaaatataaccaaaacacaagtaattttactga |
51650153 |
T |
|
| Q |
209 |
ttaattaccttccatcaacaagttcttccttgaatttgagaaactcagcaggttgcaaattttcaac |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51650152 |
ttaattaccttccatcaacaagttcttccttgaatttgagaaactcagcaggttgcaaattttcaac |
51650086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 55866695 - 55866822
Alignment:
| Q |
159 |
cattcataatttgtgtaaaaatataaccaaaacacaggtaat-----------tttactgattaattaccttccatcaacaagttcttccttgaatttga |
247 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
55866695 |
cattcataatttgtgtaaaaatataaccaaaacacaactaataaaagccttaatttactgattatataccttccatcaacaagttcttccttgaatttga |
55866794 |
T |
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| Q |
248 |
gaaactcagcaggttgcaaattttcaac |
275 |
Q |
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| T |
55866795 |
gaaactcagctggttgcaaattttcaac |
55866822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 67 - 275
Target Start/End: Complemental strand, 29144169 - 29143950
Alignment:
| Q |
67 |
ggacgagggaaagatgcagtaaatggttcaaagtccaactcaagcacaaagtttccattagcactgtaataaaagtgagacagaatcagaatcattcata |
166 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| |||||||| || |||||||| |
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| T |
29144169 |
ggacgagggaaagatgcagtgaatggttcaaagtccaactcaagcacatagtttacattagcactgcaataaaagtgagccagaatcaaaaccattcata |
29144070 |
T |
|
| Q |
167 |
atttgtgtaaaaatataaccaaaacacaggtaat-----------tttactgattaattaccttccatcaacaagttcttccttgaatttgagaaactca |
255 |
Q |
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||||||||||||||||| |||||||||| |||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29144069 |
atttgtgtaaaaatatagccaaaacacaactaataaaagccttaatttactgatttattatcttccatcaacaagttcttccttgaatttgagaaactca |
29143970 |
T |
|
| Q |
256 |
gcaggttgcaaattttcaac |
275 |
Q |
| |
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|| ||||||||||||||||| |
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| T |
29143969 |
gctggttgcaaattttcaac |
29143950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 272
Target Start/End: Original strand, 43123760 - 43123883
Alignment:
| Q |
159 |
cattcataatttgtgtaaaaatataaccaaaacacaggtaat-----------tttactgattaattaccttccatcaacaagttcttccttgaatttga |
247 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
43123760 |
cattcataatttgtgtaaaaatataactaaaacacaactaataaaagccttaatttactgattatataccttccatcaacaagttcttc-ttgaatttga |
43123858 |
T |
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| Q |
248 |
gaaactcagcaggttgcaaattttc |
272 |
Q |
| |
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|||||||||| |||||||||||||| |
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| T |
43123859 |
gaaactcagctggttgcaaattttc |
43123883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 8349029 - 8349129
Alignment:
| Q |
16 |
aggtggcgattaaggaattgcacaccatttccaattgacttgttgagagtaggacgagggaaagatgcagtaaatggttcaaagtccaactcaagcacaa |
115 |
Q |
| |
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||||||| ||| ||||||| |||| ||||||||||||| ||||||||||| |||| | |||||||||||||||||||||| || |||||||| ||||| |
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| T |
8349029 |
aggtggcaattgaggaatttcacatcatttccaattgatttgttgagagttggacaacggaaagatgcagtaaatggttctaaaaacaactcaaccacaa |
8349128 |
T |
|
| Q |
116 |
a |
116 |
Q |
| |
|
| |
|
|
| T |
8349129 |
a |
8349129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 8410743 - 8410831
Alignment:
| Q |
10 |
gcagagaggtggcgattaaggaattgcacaccatttccaattgacttgttgagagtaggacgagggaaagatgcagtaaatggttcaaa |
98 |
Q |
| |
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||||| |||||| |||| ||||||| ||||||||| ||||||| || |||||||||||||| | |||||| |||||||||||||||||| |
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| T |
8410743 |
gcagaaaggtggagattgaggaatttcacaccattcccaattgtctggttgagagtaggacaatggaaaggtgcagtaaatggttcaaa |
8410831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 8355094 - 8355175
Alignment:
| Q |
16 |
aggtggcgattaaggaattgcacaccatttccaattgacttgttgagagtaggacgagggaaagatgcagtaaatggttcaa |
97 |
Q |
| |
|
||||||||||| ||||||| |||| |||| ||||||| ||| |||||||||||| | |||||||| ||||||||||||||| |
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| T |
8355094 |
aggtggcgattgaggaatttcacatcattcccaattgtcttcttgagagtaggaaaatggaaagatacagtaaatggttcaa |
8355175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 8361502 - 8361548
Alignment:
| Q |
36 |
cacaccatttccaattgacttgttgagagtaggacgagggaaagatg |
82 |
Q |
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||||||||| ||||||||||||||||||||||||| | ||||||||| |
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| T |
8361502 |
cacaccattcccaattgacttgttgagagtaggacaatggaaagatg |
8361548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 19155292 - 19155410
Alignment:
| Q |
9 |
agcagagaggtggcgattaaggaattgcacaccatttccaattgacttgttgagagtaggacgagggaaagatgcagtaaatggttcaaagtccaactca |
108 |
Q |
| |
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|||||| || |||||||| ||||| | |||||||||||||| |||||||| || || || ||||| ||||| || | ||||||||||||||||||||| |
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| T |
19155292 |
agcagaaagatggcgattgaggaactcaacaccatttccaatcgacttgttcagggttggtcgaggaaaagaggcgttgaatggttcaaagtccaactca |
19155391 |
T |
|
| Q |
109 |
agcacaaagtttccattag |
127 |
Q |
| |
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||||||||||| ||||||| |
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|
| T |
19155392 |
agcacaaagttgccattag |
19155410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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