View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11703_high_71 (Length: 287)

Name: NF11703_high_71
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11703_high_71
NF11703_high_71
[»] chr5 (9 HSPs)
chr5 (1-269)||(33821379-33821647)
chr5 (185-264)||(33748520-33748599)
chr5 (185-264)||(33834640-33834719)
chr5 (54-127)||(33734191-33734264)
chr5 (197-268)||(33733903-33733974)
chr5 (75-125)||(33748665-33748715)
chr5 (75-125)||(33834785-33834835)
chr5 (64-125)||(33762658-33762719)
chr5 (206-266)||(33762493-33762553)
[»] chr8 (2 HSPs)
chr8 (59-125)||(21305761-21305827)
chr8 (195-264)||(21305646-21305715)
[»] chr7 (2 HSPs)
chr7 (69-129)||(5471321-5471381)
chr7 (216-265)||(5471492-5471541)
[»] scaffold0247 (1 HSPs)
scaffold0247 (66-110)||(22284-22328)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 33821647 - 33821379
Alignment:
Q  1 acacacatttgcggaagaaggttctttcagaatcagtagnnnnnnnnnnnnnngagagacctgaggaaacaatgaaagctcatgaagttattaaacctcg 100  Q
    |||||||||||||||||||||||||||||||||||||||              ||||||||| |||||||||||||||||||||||||||||| ||||||    
T  33821647 acacacatttgcggaagaaggttctttcagaatcagtagaaaaaaatgaaaaagagagacctaaggaaacaatgaaagctcatgaagttattatacctcg 33821548  T
Q  101 acctataactctttcaactcattcatctttcatgacacaaccaatattgaattcaaataatgatagtaaaattctcatggatcgtgatggctcatcagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33821547 acctataactctttcaactcattcatctttcatgacacaaccaatattgaattcaaataatgatagtaaaattctcatggatcgtgatggctcatcagag 33821448  T
Q  201 attatggtttcaaatcaaattggtagagattgtgcttctgcttcacaacaaagtctaggtaatgttccc 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33821447 attatggtttcaaatcaaattggtagagattgtgcttctgcttcacaacaaagtctaggtaatgttccc 33821379  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 33748599 - 33748520
Alignment:
Q  185 tgatggctcatcagagattatggtttcaaatcaaattggtagagattgtgcttctgcttcacaacaaagtctaggtaatg 264  Q
    ||||| ||||||||| | ||||||| |  ||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
T  33748599 tgatgcctcatcagacactatggttcctgatcaaattggtagagattgtgcttctgattcacaaccaagactaggtaatg 33748520  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 33834719 - 33834640
Alignment:
Q  185 tgatggctcatcagagattatggtttcaaatcaaattggtagagattgtgcttctgcttcacaacaaagtctaggtaatg 264  Q
    ||||| ||||||||| | ||| |||||  ||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
T  33834719 tgatgcctcatcagacactatagtttctgatcaaattggtagagattgtgcttctgattcacaaccaagactaggtaatg 33834640  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 33734264 - 33734191
Alignment:
Q  54 gagagacctgaggaaacaatgaaagctcatgaagttattaaacctcgacctataactctttcaactcattcatc 127  Q
    |||| |||| |||||||||||||||||||||||||||||||||| | ||||  || | ||||||||||||||||    
T  33734264 gagaaacctaaggaaacaatgaaagctcatgaagttattaaaccccaacctcgaattttttcaactcattcatc 33734191  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 33733974 - 33733903
Alignment:
Q  197 agagattatggtttcaaatcaaattggtagagattgtgcttctgcttcacaacaaagtctaggtaatgttcc 268  Q
    ||||| ||||||| || |||||| ||||||||| ||||||||||||||||||| |||| ||| |||||||||    
T  33733974 agagactatggttacatatcaaaatggtagagactgtgcttctgcttcacaaccaagtatagataatgttcc 33733903  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 33748715 - 33748665
Alignment:
Q  75 aaagctcatgaagttattaaacctcgacctataactctttcaactcattca 125  Q
    |||||||||||||||||||||||||| ||  ||||| ||||||||||||||    
T  33748715 aaagctcatgaagttattaaacctcgtccattaactttttcaactcattca 33748665  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 33834835 - 33834785
Alignment:
Q  75 aaagctcatgaagttattaaacctcgacctataactctttcaactcattca 125  Q
    ||||||||||||||||| |||||||| ||  ||||| ||||||||||||||    
T  33834835 aaagctcatgaagttatcaaacctcgtccattaactttttcaactcattca 33834785  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 33762719 - 33762658
Alignment:
Q  64 aggaaacaatgaaagctcatgaagttattaaacctcgacctataactctttcaactcattca 125  Q
    ||||||| |||||| | ||||||||||||||||||| ||||  || | ||||||||||||||    
T  33762719 aggaaactatgaaaacacatgaagttattaaacctcaacctcgaattttttcaactcattca 33762658  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 33762553 - 33762493
Alignment:
Q  206 ggtttcaaatcaaattggtagagattgtgcttctgcttcacaacaaagtctaggtaatgtt 266  Q
    ||||||||||||| |||||||||||| || |||  ||||||||| |||| ||| |||||||    
T  33762553 ggtttcaaatcaagttggtagagattatgtttcctcttcacaaccaagtatagataatgtt 33762493  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 21305827 - 21305761
Alignment:
Q  59 acctgaggaaacaatgaaagctcatgaagttattaaacctcgacctataactctttcaactcattca 125  Q
    |||| ||||||| ||||||||||||||||||||||||||||| ||||||||| | |||| |||||||    
T  21305827 acctaaggaaaccatgaaagctcatgaagttattaaacctcgtcctataactttgtcaagtcattca 21305761  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 264
Target Start/End: Complemental strand, 21305715 - 21305646
Alignment:
Q  195 tcagagattatggtttcaaatcaaattggtagagattgtgcttctgcttcacaacaaagtctaggtaatg 264  Q
    ||||||| ||||| ||||||||||||||||||||| ||||||||| ||||| ||| |  |||||||||||    
T  21305715 tcagagaatatggcttcaaatcaaattggtagagagtgtgcttctacttcaaaaccagatctaggtaatg 21305646  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 5471321 - 5471381
Alignment:
Q  69 acaatgaaagctcatgaagttattaaacctcgacctataactctttcaactcattcatctt 129  Q
    ||||||||||||||  |||||||||||||| ||||||||||| |||||||||| |||||||    
T  5471321 acaatgaaagctcaccaagttattaaacctagacctataactttttcaactcaatcatctt 5471381  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 5471492 - 5471541
Alignment:
Q  216 caaattggtagagattgtgcttctgcttcacaacaaagtctaggtaatgt 265  Q
    |||||||||| ||||||||||||| ||||||||| || ||||||||||||    
T  5471492 caaattggtaaagattgtgcttcttcttcacaaccaattctaggtaatgt 5471541  T

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Target: scaffold0247 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 22284 - 22328
Alignment:
Q  66 gaaacaatgaaagctcatgaagttattaaacctcgacctataact 110  Q
    |||||||||||||||||||| |||||||||||||| |||||||||    
T  22284 gaaacaatgaaagctcatgaggttattaaacctcggcctataact 22328  T

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