View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11703_high_76 (Length: 261)
Name: NF11703_high_76
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_76 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 12361888 - 12361635
Alignment:
| Q |
1 |
ttaattcatcactagatttaaatagctaggtaggtgtactttttcttttggtctagacctataggagtactggagattgtgaggagaaacacaaattcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12361888 |
ttaattcatcactagatttaaatagctaggtaggtgtactttttcttttggtctagacctataggagtactggagattgtgaggagaaacacaaattcag |
12361789 |
T |
|
| Q |
101 |
gagctaaatttactgtttcagatgaatcaaccgaacgtatagacatagaacaataatctactttttataacatatacagtctatnnnnnnnnnnnnnnnn |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12361788 |
gagctaaatttactgtttctgatgaatcaaccaaacgtatatacatagaacaataatctactttatataacatatacagtctattaaaaataaaataaaa |
12361689 |
T |
|
| Q |
201 |
nnncatatagtgtttttatttatttattatatttggtaatttcctcctttgctt |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12361688 |
taacatatagtgtttttatttatttattatatttggtaatttcctcctttgctt |
12361635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University